Gene detail

Gene detail information of Glyur000129s00012476.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26640.1	0	3-ketoacyl-CoA synthase 11
NR	XP_003536202.1	0	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Glycine max]
COG	NP_285649.1	1.00E-18	chalcone synthase [Deinococcus radiodurans R1]
Swissprot	tr\|O48780\|KCS11_ARATH	0	3-ketoacyl-CoA synthase 11
trEMBL	tr\|I1LC39\|I1LC39_SOYBN	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000129s00012476.1
CCCTTTAATTATCGTTCACACTCACATGCTTAGGCAAACATATTTCTCTTCCAAAGTTGAGTCCTTTACTACCCATTGAGAAGAAAAAAACCCAAAGCCACCCTCTTTTTTATTTTGAATTGTTATATTAAAGTTCCCTTGTCTCTTCTATCTACCCTTTTGGGATATTCAATTCTCCTCCCCTGCTTCACACAAACCCAATATTTCAAAAGAGTACTATAGTTCCCCCACCNCATGGCAGATCACAAGAATCAAATTCAAACCCCAAATTCAGGAACCAACATCTCTGTTGAAGGTTCACANGAAAAAAGGAACAAACTTCCCAACTTTCTGCTATCTGTGAAGCTCAAGTATGTTAAGCTTGGGTACCACTACTTAATCTCCAATGCTATGTACCTTTTGCTAATACCCCTTCTTGGGGTAGCTTCAGCTCATTTATCAACTATCTCTTACCATGATGTTGTTCAACTATGGGAAAATCTCAAGTTCAATTTGGTCTCAGTGACTCTNTGTTCCTGTCTCATGGTATTTCTTGTGACCCTTTACTTCATGAGCCGTCCAAGGGGTGTTTACTTGGTGGACTTTGCATGTTACAAGCCTAACACGGATTGCACATGCACGAGGGAGATGTTCATGGAAAGGTCTGAGTTGACTGGGACATTCTCGGAGGAGAATTTGGCGTTTCAGAAGAAGATACTTGAGAGGTCTGGTTTGGGNCAAAAGACTTACTTGCCTTCAGCAATNTTGAGTGTCCCACCAAACCCGTGTATGGCTGAGGCAAGGAAAGAAGCAGAGGAAGTGATGTTTGGTGCCATTGACCAGCTTCTGGAGAAAACTGGGGTGAAGGCTAAGGATATTGGGATTTTGGTGGTGAATTGCAGCTTGTTCAACCCCACACCATCCCTCTCTGCAATGATTGTGAACCACTACAAGTTGAGAGGGAACATCCTAAGTTATAATCTTGGGGGCATGGGTTGTAGTGCTGGCCTTATCTCTATAGACCTTGCCAAGCAGCTCCTTCAGGTTCATCCCAACTCTTATGCCTTAGTAGTGAGCATGGAGAACATCACTCTCAACTGGTATTTTGGCAACAACCGATCCATGCTAGTCTCAAATTGTCTNTTTAGAATGGGTGGAGCTGCAATCCTTCTCTCCAACAAGCCTTCTGATAGCAGAAGAGCCAAATACCAGCTTATCCACACAGTGCGTACTCATAAAGGTGCAGATGACAAATCCTATGGCTGTGTCTTCCAAGAGGAAGATGAGAAGAAAACAGTTGGTGTGGCACTCTCAAAGGACTTAATGGCCGTAGCTGGAGAAGCCCTCAAGACCAATATCACCACACTTGGCCCATTAGTCCTTCCCATGTCAGAGCAACTCTTGTTCTTTGCCACTTTGGTTGCAAGAAAAGTGTTCAAGATGAAGATAAAACCATACATCCCTGATTTTAAGCTAGCATTTGAGCACTTTTGCATCCATGCTGGTGGAAGAGCAGTGTTGGATGAGTTGGAGAAGAATCTAGAGCTTACTGATTGGCATATGGAGCCCTCAAGAATGACCCTTAACAGGTTTGGTAACACTTCTAGTAGCTCCTTGTGGTATGAATTGGCCTACACTGAAGCTAAAGGGAGGATCAGAAAGGGTGACAGGACTTGGCAGATTGCATTTGGTTCTGGGTTCAAGTGTAACAGTGCAGTGTGGCGTGCATTGAGGACTATTAATCCAGCAAAGGAGAAGAATCCTTGGATGGATGAGATTCATGAGTTCCCTGTTTCTGTGCCTAAAGTGGCAACCATTGGTTCCTAAGTTAAACCTTAATTAATCCTCTTGTCCTTTTTATTTTTATTTTGTGAAGGCTATACAAAAGGGAGAAGTTTAATTAAAGGGTTTCATAGTTAATGATCTTAGGAAGTGTGCAAAGATGGAAAGAGTCGAAGATTGCTTCCAGCAGCTTTGTTTGATAGTTTGGCAGTTTAGTTTCTTTTGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	262472	265291	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012476.1	PF08392.7	FAE1_CUT1_RppA	104	393	9.90E-147
Glyur000129s00012476.1	PF08541.5	ACP_syn_III_C	410	490	2.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.325
SRR1783600	control	16.377
SRR1783602	moderate drought stress	12.646
SRR1811619	moderate drought stress	12.392

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.056
DRR006522	Root Winter glycyrrhizin high producing strain	0.035
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.202
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.909

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.466
SRR2868004	Drought Stress (root)	35.688
SRR2967015	Control (root)	28.753

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.580
SRR9715740	Leaf	35.821
SRR9715741	Leaf	19.094
SRR9715739	Root	37.129
SRR9715742	Root	19.474
SRR9715743	Root	21.947

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.036
SRR8749028	MeJA induced 9h	0.067
SRR8749029	MeJA induced 9h	0.092
SRR8749030	Uninduced	1.979
SRR8749031	Uninduced	3.281
SRR8749032	Uninduced	0.331

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	101.400
SRR8400027	Control - Root	103.439