Gene detail information of Glyur000129s00012470 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22970.1 | 7.00E-102 | Protein of unknown function (DUF506) |
| NR | XP_003556392.1 | 0 | PREDICTED: uncharacterized protein LOC100812376 [Glycine max] |
| trEMBL | tr|I1NIB2|I1NIB2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G35390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00129 | 230621 | 232904 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000129s00012470.1 | PF04720.7 | DUF506 | 88 | 305 | 2.50E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 62.945 |
| SRR1783600 | control | 58.191 |
| SRR1783602 | moderate drought stress | 65.708 |
| SRR1811619 | moderate drought stress | 64.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 94.289 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 93.955 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.972 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.808 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 70.574 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 71.182 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.979 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.457 |
| SRR2868004 | Drought Stress (root) | 79.849 |
| SRR2967015 | Control (root) | 84.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.640 |
| SRR9715740 | Leaf | 6.287 |
| SRR9715741 | Leaf | 4.628 |
| SRR9715739 | Root | 42.161 |
| SRR9715742 | Root | 36.840 |
| SRR9715743 | Root | 40.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.593 |
| SRR8749028 | MeJA induced 9h | 15.723 |
| SRR8749029 | MeJA induced 9h | 37.542 |
| SRR8749030 | Uninduced | 4.495 |
| SRR8749031 | Uninduced | 11.760 |
| SRR8749032 | Uninduced | 21.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.805 |
| SRR8400027 | Control - Root | 55.354 |