Gene detail information of Glyur000129s00012460 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22930.1 | 2.00E-69 | calmodulin-like 11 |
| NR | AFK42854.1 | 4.21E-97 | unknown [Lotus japonicus] |
| COG | YP_001866396.1 | 6.00E-33 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9LIK5|CML11_ARATH | 1.00E-87 | Calmodulin-like protein 11 |
| trEMBL | tr|I3SRG2|I3SRG2_LOTJA | 2.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:AFK42854.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00129 | 180838 | 182581 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000129s00012460.1 | PF13499.1 | EF-hand_7 | 14 | 73 | 9.90E-15 |
| Glyur000129s00012460.1 | PF13499.1 | EF-hand_7 | 86 | 146 | 8.60E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.719 |
| SRR1783600 | control | 3.747 |
| SRR1783602 | moderate drought stress | 3.093 |
| SRR1811619 | moderate drought stress | 3.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.442 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.524 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.135 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.133 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.682 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.780 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.464 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.073 |
| SRR2868004 | Drought Stress (root) | 62.350 |
| SRR2967015 | Control (root) | 48.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 180.724 |
| SRR9715740 | Leaf | 73.645 |
| SRR9715741 | Leaf | 128.941 |
| SRR9715739 | Root | 11.774 |
| SRR9715742 | Root | 10.514 |
| SRR9715743 | Root | 11.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 128.621 |
| SRR8749028 | MeJA induced 9h | 129.962 |
| SRR8749029 | MeJA induced 9h | 224.183 |
| SRR8749030 | Uninduced | 223.110 |
| SRR8749031 | Uninduced | 145.449 |
| SRR8749032 | Uninduced | 80.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.984 |
| SRR8400027 | Control - Root | 20.396 |