Gene detail

Gene detail information of Glyur000129s00012457

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein
NR	XP_004495425.1	PREDICTED: 65-kDa microtubule-associated protein 3-like [Cicer arietinum]
Swissprot	tr\|Q9FHM4\|MA653_ARATH	65-kDa microtubule-associated protein 3
trEMBL	tr\|V7BDJ5\|V7BDJ5_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW15892.1}

Sequence

Transcript Sequence

>Glyur000129s00012457.1
ATTTTTTGGAAAAAGAAGGTAGAGAAGAGAGGAGTAATAAATCCAAATCAAAGGCACGTAGAGCGCTCTTTCATCTTCAACGGTCCCCTTTTCCTCAAAACGGCTACATTCTCTCTCCCTCTCTCTCATCAATTCAAACTTCAAAGTTCAAATCCATTTTTTTTCCACGAAAACTCAACTCCACTCTCATTTTNTCGGGAAAATCACACTCATTCCTCTTCTCAGCACTCAGCAGTGAGCAAAGGAAAATCCCAACACTAGACAATTCCTCGATCCCCCTTGTGCTGTTTTAGATACCAGTGCTCGAAAATGTCTAAAACTCAAAATGATCCCCTTTCGCAAGCTGAAACAACATGTGGAACACTTCTGTATGAACTTCAGATAATATGGGATGAAGTTGGGGAATCTGAGACTGACAGAGACAGAATGCTGTATGAGCTTGAACAAGAGTGTCTAGAAGTGTACAGAAGGAAGGTAGATCTGGCAAATCGGTCTAGAGCTCAATTAAGGCAGGCAATTGCTGATTGTGAGGCAGAACTTGCAGCCATCTGTTCAGCAATGGGAGAGCGACCAGTACACATTAGGCAGTCTGACCAAAATGCTGGAAGCCTAAGGGAAGAGCATGCAAGAATTCTTCCACAGTTGGAGGAGATGCAAAAGAGGAANTCTGAGCGTAGAAATCAATTTATAGAAGTTCAAGAGCAGATTCAAAGTATCTCGATTGAGATTTATGGTCCCAGAGAGTATATTCCTGCCATTGTAGATGAAACTGATTTATCCTTGAGAAAACTTGAAGAATTGCACAGACAGCTGCATGCACTTCAAAGTGAGAAGAGTGCTCGCCTAAAGATGGTCCAGGAGCACCTGTATACTTTAAATTCTCTTTGTTTAGTGCTTGGTTTGGACTTTAAGCAGACAGTCAATGGAATTCATCCCGGTTTAGGAGACTTAGAAGGACCTAAAACTGTGAGTAATGATACCATCCAGCAATTGGCTGTCACTATACAAGAACTGCGGGAAGTTAAATTACAGAGAATGCAGAAGCTCCAAGATCTTGCAACAACAATGTTGGAGCTATGGAACTTGATGGACACACCTATTGAAGAGCAACAGATGTTTCAGAATGTTACTTGTAATATAGCTGCTTCAGAACATGAAGTAACTGAACCAAACACCTTGTCTCTGGACTTCATCAATTGTGTTGAGGTGGAAGTATCTAGGTTGGAAGAGTTAAAATCAAGCAAATTGAAAGAGCTTGTATTAAAGAAGAGAACAGAGCTGGAGGAGATTTGTCGAAAGACTCATTTGGTTCCAGAAGTAGATGGTGCAGTCGAATATGCTGTTGAAGCTATAGAATCCGGAACTGTGGACCCTGCTTGTGTGCTTGAGCAGATTGAACTTCAGATTTCCCAAGTTAAAGAGCAAGCTTTTGGTCGAAAAGAAATACTTGAAAAGGTTGAGAAATGGTTGGCAGCATGTGATGAAGAGTCTTGGCTTGAGGAATACAACAGGGATGAAAATCGATATAATGCTGGGAGAGGCGCTCATCTTACTCTCAAGCGAGCTGAGAAAGCTCGTGCCTTGGTTAACAAAATTCCAGCAATGGTAGATGCTTTGACTTCGAAAACCATAGCATGGGAAAAGGAAAAAGGCATCGAGTTCACGTTTGATGGTATTCCTCTACTCTCTATGCTTGAAGAGTACACTATATTACGGCAAGAGAAGGAGCAAGAACGTCGTAGGCAGCGGGACCTGAAGAAGCTGCAGGGACAAATGATAGCAGAACAGGAGGCACTATATGGGTCAAAACCAAGCCCTTCAAAGCCCCAGAGTGTAAAGAAGGCATCTAGGATGTCAACCGGAGGTGCAGCTAGTAGAAGAGTCTCCCTTGGAGGAGCAATGATTCAAACTCCTAAACCTGATTCAAAAGCTACTAGTTCTCGTGCTATGAGAAAGACCGACAAAGCGCACCAAATNGAGCAACTAAATTACCTGGATGATGGCTTTTCGTGTTTATCATCAGCTCGAAGAGGACTGGATGTTGCCGGCATTCCTGTGAAAAAACACTCATTTGGTGCTGGCAGTGCTCACGGCATAGAATCTCCTCTGACAAGACAGCCTTTTTCTCCCATNTCTTCTAATGTATCATCAAAAGCGAATGTGGGAAATGTCGGAAATGAGCTGAATACAGAGAGTGAGAAGTTGCAGAAGACAATGCCAGTCAACAATGTGCCATTCACTACTCCCTCCANGACAGCTACTGTGGTAGATGAAGAGAATAGAACTCCAAAGGCGATGCCTATTCCTGTCCCTGCAACACCTTCGACAGTATCAGTTCCAATGAGTATGGCCACAACCCCAGTTCCTTCATCCGTTTTGATGAATGTGGGCATGACTCCAGCTCCCTTATCAGCTCCTTTTGGAGGTGACTTGGTTCAGGAGATTGAATATTCCTTTGAGGAAAGAAGGCTTGGTTTTATGTTAGCATGATTATTTTGTTTGACTTTTCATTTTACCTGCTATAGTTACCTGTGATGGATAATCACAAGTCAATTGTAATTGGCTTCCTGATTGTGTACATTACGAGAAGTGAACATAGATTAGGATGTGGAACAAGCTTGCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	144935	150362	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000226 microtubule cytoskeleton organization

GO:0000910 cytokinesis

molecular_function
GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012457.1	PF03999.7	MAP65_ASE1	38	650	3.00E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.369
SRR1783600	control	8.341
SRR1783602	moderate drought stress	5.870
SRR1811619	moderate drought stress	5.752

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.296
DRR006520	Root Summer glycyrrhizin high producing strain	9.051
DRR006521	Root Winter glycyrrhizin high producing strain	0.807
DRR006522	Root Winter glycyrrhizin high producing strain	0.871
DRR006523	Root Summer glycyrrhizin low producing strain	4.679
DRR006524	Root Summer glycyrrhizin low producing strain	4.874
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.705
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.554

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.624
SRR2868004	Drought Stress (root)	12.544
SRR2967015	Control (root)	15.014

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.259
SRR9715740	Leaf	1.294
SRR9715741	Leaf	1.701
SRR9715739	Root	1.214
SRR9715742	Root	3.624
SRR9715743	Root	2.999

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.908
SRR8749028	MeJA induced 9h	8.124
SRR8749029	MeJA induced 9h	5.358
SRR8749030	Uninduced	0.797
SRR8749031	Uninduced	0.668
SRR8749032	Uninduced	0.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.262
SRR8400027	Control - Root	13.851