Gene detail

Gene detail information of Glyur000129s00012456

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62260.1	5.00E-48	AT hook motif DNA-binding family protein
NR	XP_003555530.1	5.43E-180	PREDICTED: uncharacterized protein LOC100789179 [Glycine max]
Swissprot	tr\|Q9S7C9\|ESCA_ARATH	4.00E-09	Putative DNA-binding protein ESCAROLA
trEMBL	tr\|I1NIC3\|I1NIC3_SOYBN	2.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G35480.1}

Sequence

Transcript Sequence

>Glyur000129s00012456.1
AATTTTTTATCAACTTTATTTATTTACTCCACCTTTTCCTGCAAAACCCTAAATTCACGTATTCACTCGGGAGAATTTCTGAANTAGACTTTGTATTTTTCTTTGTAATTGTAGAAATTTTTTCCGAAAATTCTGTGTTAATTTCAAAGCTTTCTGTGTTCTCTGCAATGGCGCAGATTTGAGCTTACAGCACTGCGATTTTCTCGGAGGACAAGCTCAGCTGCTTCAATTCCAGCTCTGGGTCTTCATCGTTTTACAGTTTCATACAANAAAGTTTGTGTTTTTGATGTTTACTCTGAGATAGTAAATTTTTCTTGCATTCATATCTGTTTCTCTTCAATAAGTTTATCATTTTCCCTTTTGAAAAAANTTAATTTTTTCTGATTTTTATTGAGTGATTGGGTGTGAAAACGTTTGAATCTTCAATGGGTAGGGTTTAAGCAAAATTTAGAGGTTTTGGGGTGTCTTAGTTTTTGTTTGATTCTCATAAAAATGGAGGAAAGAGAGAATTTTGGTGCTGGACATGCAGTGGTGAGTGCTGAGGCCCCAGAGAGCTTCCACGTGGCTCCTAGAATTGGGAACAACTTGGATTTTTCCATGGCCACGGTGCCGGCGCCGGCGCCGGCGACGGAGGTGAAGAAGAAGAGGGGGAGGCCTAGGAAGTATGGACCAGACGGCAGGGCGGTGCCGGGGGCGGTGGCTGCTCTCTCACCGATGCCGATTTCGTCATCGATTCCATTGACCGGCGACTTCTCCGCTTGGAAAAGGGGCAGAGGGAGGCCTGTTGAATCTATNAAGAAGTCAACATATAAGTATGAATTTGAAAGTCCAGGACCAGGTGAGGGAATTGCATACTCAGTAGGTGCCAATTTCACGCCACATATTCTTACAGTAAATACTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCGCAACAAGGATCACGTGCTATCTGCATTCTCTCCGCAACTGGCACAATTTCAAATGTTACACTTCGNCAACCGTCTTCTTCAGGGGGTACTTTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGGTCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTAATGGGTGGTGGACTCGCCGGTTTGCTTATAGCTGCTGGTCCTGTGCAGCACAAGAAGCCAAGGGTGGAGCATCATATATCATCACCACCCATTACCTCTACACATCCTGTTAACCTTATCACCAGTGAGGAATTAAAAGTCAGTTTTGGTGGAGTGAAGCCTATTATGACACCTGCTGCTTTTCAGGAAGAGAATATTAATAATACTTCATTTAACAATGTTAATCAAGACTCTAGGAACTCATCTGCTGATGATGTTGATGATGATAAAGAAGACCCTTTACACGAAAAGGAGTCTAACCTTAGCCAATCAAATGTTGCTGATGCCACATGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	137915	142756	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012456.1	PF03479.10	DUF296	127	236	5.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.288
SRR1783600	control	10.025
SRR1783602	moderate drought stress	10.954
SRR1811619	moderate drought stress	10.170

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.108
DRR006520	Root Summer glycyrrhizin high producing strain	15.755
DRR006521	Root Winter glycyrrhizin high producing strain	9.511
DRR006522	Root Winter glycyrrhizin high producing strain	9.250
DRR006523	Root Summer glycyrrhizin low producing strain	17.583
DRR006524	Root Summer glycyrrhizin low producing strain	17.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.079
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.808

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.334
SRR2868004	Drought Stress (root)	57.417
SRR2967015	Control (root)	55.325

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.506
SRR9715740	Leaf	31.559
SRR9715741	Leaf	27.946
SRR9715739	Root	23.604
SRR9715742	Root	25.027
SRR9715743	Root	24.418

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.405
SRR8749028	MeJA induced 9h	14.021
SRR8749029	MeJA induced 9h	10.637
SRR8749030	Uninduced	10.521
SRR8749031	Uninduced	8.548
SRR8749032	Uninduced	7.338

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.057
SRR8400027	Control - Root	41.701