Gene detail information of Glyur000129s00012455 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17340.1 | 3.00E-141 | Uncharacterised conserved protein (UCP030210) |
| NR | XP_004495428.1 | 0 | PREDICTED: uncharacterized protein At2g17340-like [Cicer arietinum] |
| COG | YP_005445654.1 | 5.00E-43 | hypothetical protein PSMK_15980 [Phycisphaera mikurensis NBRC 102666] |
| Swissprot | tr|Q949P3|Y2734_ARATH | 0 | Uncharacterized protein At2g17340 |
| trEMBL | tr|K7N4U8|K7N4U8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G35492.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00129 | 129900 | 136097 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000129s00012455.1 | PF01937.14 | DUF89 | 137 | 404 | 1.40E-48 |
| Glyur000129s00012455.2 | PF01937.14 | DUF89 | 112 | 379 | 1.10E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.769 |
| SRR1783600 | control | 1.805 |
| SRR1783602 | moderate drought stress | 1.113 |
| SRR1811619 | moderate drought stress | 0.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.261 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.355 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.186 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.759 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.805 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.046 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.107 |
| SRR2868004 | Drought Stress (root) | 1.652 |
| SRR2967015 | Control (root) | 1.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.891 |
| SRR9715740 | Leaf | 67.460 |
| SRR9715741 | Leaf | 36.389 |
| SRR9715739 | Root | 0.338 |
| SRR9715742 | Root | 0.391 |
| SRR9715743 | Root | 0.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.072 |
| SRR8749028 | MeJA induced 9h | 0.042 |
| SRR8749029 | MeJA induced 9h | 0.058 |
| SRR8749030 | Uninduced | 0.031 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.333 |
| SRR8400027 | Control - Root | 3.459 |