Gene detail

Gene detail information of Glyur000129s00012448.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51560.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003536190.1	0	PREDICTED: somatic embryogenesis receptor kinase 5-like [Glycine max]
COG	YP_004735589.1	8.00E-27	Receptor-like protein kinase [Zobellia galactanivorans]
Swissprot	tr\|Q8RY65\|NIK2_ARATH	4.00E-68	Protein NSP-INTERACTING KINASE 2 (Precursor)
trEMBL	tr\|I1LC21\|I1LC21_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G32090.1}

Sequence

Transcript Sequence

>Glyur000129s00012448.1
ATGGGTTTTTCAGTACTACAGCTACTTCTTCTTCTGTCTCACCTGTTTTTCTTCCTCTTAAACCCAACATGGGTCTGTGGGAANGATGAGCTAAGAGCACTCATGGACATGAAAGCCAGCTTGGATCCAGAGAGCCATTATCTACCCTCCTGGACCATCAGTGGTAGTAACCCATGTGGTGGATCTTTTGAAGGAGTAGCATGCAATGAGAAGGGTCATGTAGCAAACATTTCTTTGCAAGGAAAAGGCCTCTATGGGAAGCTTTCACCAGCCATTGCTGGGCTCAAGCACTTGACAGGCCTCTANTTGCATTACAACTCTTTGTATGGAGATATACCAAGAGAAATTTCAAACTTGACTCAGCTTGCTGAGTTGTATTTGAATGTGAATCATCTCTCTGGGGAAATCCCTCCTGAGATCAGCAACATGGAGAACTTGCAAGTTTTGCAGCTTAGTTATAATAAGTTGACTGGAAGCATACCTACGCAGCTTGGTGCTTTGAAAAAGCTAAGTGTTGTTGCTCTTCAGTCAAACCAGTTAACTGGTGCCATCCCTGCTAGTCTGGGTGATTTGGGTATGCTGGTGAGGCTAGATTTGAGCTCCAATGATCTCTTTGGTTCCATTCCTACTAGCCTAGTTGATGCTCCTTCACTCAAAGTTCTGGATGTCCACAACAATTCACTTTCTGGGAATGTACCTCCTGCTCTTAAGAGACTAGATGATGGATTTCTGTATGAACACAATCTGGGGTTATGTGGAGTTGGGTTTCCATCCTTGAAATCTTGCAACCATACAGATGGTGGTGTCAATCCAAGCAGGCCTGAACCTTATGGAGCATCCACAAGAGATATCCCAGAAACTGCAAATGTGAAGTTACCTTGCAATGGGACTCAGTCTCAGTGCCTTCATTCATCAAAGTCCAATAAAGCCACATCAGTTACTGTTGGCATATGTGTGGTTATGATCATTGCAATGTCAGCGATTGGTGTTTTGACCTTCACACTATACCGTCGGCGAAAACAAAAGCTTGGAAATTCTTTTCATATCTCTGATAGCCGAACAAGTATTGATGAAGCCAAGGCTATATACAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACTCTACTGGATGGGACCCTTTGGCTGATAGTAGAAATTTCAATTTCAATGGGGATAGCCAAGATAGGTTCCGCAGCTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAATATTTCTCTGAGCTGAACTTGTTGGACAAGAGTAACTTTTGTGCAACATATAAAGGTGTTTTAAGAGATGGATCCGTTGTTGCTGTGAAGAGCATTGGCAAAACTAGTTGCAAGTCTGATGAAGCTGAGTTTTTGAAGGGATTGAATCTTTTGACCTCACTGAGGAATGATAACTTAGTGAGGTTGAGAGGGTTTTGTTGTTCAAGGGGACGGGGTGAATGCTTTCTGATCTATGATTTTGTTGCTAATGGAAATCTGTCACGCTTCCTTGATGTGAAGGACGGTGATGGAGAAGTCCTTGAATGGTCAACTAGAGTTTCTCTTGTGAAAGGAATTGCTAAAGGTATGGCATACTTACATGCATATAAAGCAAACAAACCCATTATTGTTCACCAGAACATTTCAGCTGACAAAGTTCTAATTGATCAGCGCTACAACCCGTTGCTGGCAGATTCTGGCCTGTACAAGCTTCTTACTAATGACATTGTCTTCTCTGCACTTAAGGCTAGTGCAGCAAAGGGTTACCTGGCTCCTGAATATGCCACCACTGGCCGGTTTGCGGAGACGAGCGATGTTTATGCTTTTGGGGTGCTGCTTTTCCAAATCCTTTCAGGGAAGCACAAGATAATAACTAGCTCAATGAGGCTTGCTGCAGAGTCCCTCAGGTTCAAAGAACTTATTGACCCGAATCTCCATGGCAGATTCTTCGAATATGAGGCGGCTAAACTGGCAAAAATGGCCTTGCTTTGCACCCATGATTCTCCTTTTGAGAGGCCATCCATGGAAGCCATTGTTAAAGAACTTGGCAATTGTAGTAGCTGTATCTGATTTCAATGACTAAGTCACTACTTCATTCATCATCCCCACAGTTACCTATGTGATGACTGGCTGATGACATGATGACTAAGTTAGTGCTAACTGCCAACTGCTCATGGTACTTTTTAGGGAGTAACATTTGTTCTGTGTCCTTATCCAAGTGAGTAGTTTTTATGTGAAAAAATGCCTTAAGACAGTACTAGTGGGTTGTAGCTTAGAGAAGGGGCCATTACCATTTCTTTCCTCAAATCACCTGTTAATTCTGTTGAATGTATTTTTTTTTTTCTAGTAAAGGTGAATGCCTCTTCAATTTTCAATCAGGAGCACACACACCCTTCCCCTTATCCTTATCCTTATGAAACAAAAATCCTAGGTACAAGGAATCTGTCCTTGTACAACTCAGAAGGCTGAATTGCAATTATTAATTTTCTCATCTTTACCATATTCCCTAACAGGCTTTTGCACTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	100319	103506	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012448.1	PF08263.7	LRRNT_2	29	69	2.30E-07
Glyur000129s00012448.1	PF13855.1	LRR_8	144	204	9.50E-07
Glyur000129s00012448.1	PF00560.28	LRR_1	217	239	0.57
Glyur000129s00012448.1	PF07714.12	Pkinase_Tyr	420	681	1.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.106
SRR1783600	control	6.046
SRR1783602	moderate drought stress	8.922
SRR1811619	moderate drought stress	9.010

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.293
DRR006520	Root Summer glycyrrhizin high producing strain	13.000
DRR006521	Root Winter glycyrrhizin high producing strain	1.415
DRR006522	Root Winter glycyrrhizin high producing strain	1.423
DRR006523	Root Summer glycyrrhizin low producing strain	6.507
DRR006524	Root Summer glycyrrhizin low producing strain	6.849
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.140
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.113

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.412
SRR2868004	Drought Stress (root)	2.303
SRR2967015	Control (root)	3.385

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.937
SRR9715740	Leaf	1.385
SRR9715741	Leaf	1.647
SRR9715739	Root	16.041
SRR9715742	Root	17.802
SRR9715743	Root	17.469

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.043
SRR8749028	MeJA induced 9h	0.027
SRR8749029	MeJA induced 9h	0.024
SRR8749030	Uninduced	0.151
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.045

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.363
SRR8400027	Control - Root	10.147