Gene detail

Gene detail information of Glyur000129s00012447

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33290.1	7.00E-139	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004495432.1	0	PREDICTED: uncharacterized protein ycf45-like isoform X1 [Cicer arietinum]
COG	NP_681529.1	3.00E-136	hypothetical protein tlr0740 [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|P51281\|YCF45_PORPU	2.00E-124	Uncharacterized protein ycf45
trEMBL	tr\|A0A072VN28\|A0A072VN28_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:KEH42828.1}

Sequence

Transcript Sequence

>Glyur000129s00012447.1
ATGGTCGTTGCAGTGGCATCTTCCTCGTGTTGGACTTGGATGGTAGCAGCAGCAGCAGCATGGAAATTGAAGGCAACGCCACCACCATCACTGAGGCCGTCCATTTCCACACTCAAATTCAAATGTTGCGTAGCCTCGCAACAGCAACAGCCACAGCCACAGCCACAGCCACACTGTTCTTCTATCCTTCCATCTGATTTGCATCACAATCTCCTCAATCAACCTAACCGCCCTCAACTTTTGGAGGTTATATTGGATTTAGGTCGTTTTCCCGAAGCGCGTTATCTAGGCAAACATGGAACCCAATATCTGAGGAATACCGAGGTAACGGCAAAAGAGTTGGAATNTGCTCAACAAGCTGTTGGAGAGTTTGGGAAGGACAATAGAGCTGGCATTGAGGGTACTTTGCACAGAATATCTGCAATTAGGAGTAGGAATGGTGGCATAGTTGGTTTGACCTGTCGAGTTGGGAGGGCAGTTAGTGGCCAGATTGACATGGTTTATGATCTACTTCAATATGGCAAGAGCATTTTATTTCTTGGAAGGCCTGGGGTTGGCAAGACTACTGTTATGCGAGAGATTGCTNGTGTACTGTCGGATGAATTTCACAAGAGAGTGGTGATTGTTGATACCAGTAATGAAATTGGAGGCGATGGCAATATTCCTCATGCAGCAATAGGGGGCGCACGAAGAATGCAGGTACCTGAGCCATCTTTGCAACANAGCGTGATGATTGAAGCAGTAGAAAATCACATGCCTGAGGTGATTATAGTTGATGAGATTGGCACAGAAGCTGAAGCTCATGCTTGCCGGTCAATTGCCGAGCGAGGCATCNTGCTTATAGGGACTGCTCATGGACAGCAGATTGAGAATGTCATGAAGAATCCTACACTCTCTGATTTGATTGGCGGAATAGAAAGCGTTACTCTGGGAGACGCAGAAGCCAGAGCAAGAAATTGTCAGAAGACAATTCTTGAGAGGAAAGCTCCTCCAACATTTGATTTCTTGATTGAGATGAGAGACAGACACTACTGGCTTACACATCAGACTGACAAAAGTGTAGATATGTTGCTTCGAGGCAAGAGTCCACAGGTTGAGGAATCGAAACAAACGTGGAACACCCACCCACCATTGGTCGCTGCCATAGAACCACCGCAGTCCGCGCCTCATCCTCTTTCGACGACCAAGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	85688	91588	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012447.1	PF00004.24	AAA	177	263	7.40E-05
Glyur000129s00012447.2	PF00004.24	AAA	177	263	7.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.175
SRR1783600	control	2.306
SRR1783602	moderate drought stress	3.733
SRR1811619	moderate drought stress	3.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.971
DRR006520	Root Summer glycyrrhizin high producing strain	2.802
DRR006521	Root Winter glycyrrhizin high producing strain	3.918
DRR006522	Root Winter glycyrrhizin high producing strain	4.024
DRR006523	Root Summer glycyrrhizin low producing strain	2.647
DRR006524	Root Summer glycyrrhizin low producing strain	2.425
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.751
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.808

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.791
SRR2868004	Drought Stress (root)	5.394
SRR2967015	Control (root)	6.251

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.462
SRR9715740	Leaf	9.752
SRR9715741	Leaf	7.230
SRR9715739	Root	0.408
SRR9715742	Root	0.868
SRR9715743	Root	1.253

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.884
SRR8749028	MeJA induced 9h	2.584
SRR8749029	MeJA induced 9h	2.308
SRR8749030	Uninduced	1.559
SRR8749031	Uninduced	0.929
SRR8749032	Uninduced	0.764

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.850
SRR8400027	Control - Root	5.720