Gene detail

Gene detail information of Glyur000129s00012446.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20860.1	6.00E-103	FAD-binding Berberine family protein
NR	XP_003555533.1	0	PREDICTED: reticuline oxidase-like [Glycine max]
COG	YP_001252780.1	3.00E-35	FAD-binding protein [Clostridium botulinum A str. ATCC 3502]
Swissprot	tr\|P30986\|RETO_ESCCA	1.00E-148	Reticuline oxidase (Precursor)
trEMBL	tr\|I1NID0\|I1NID0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G35570.1}

Sequence

Transcript Sequence

>Glyur000129s00012446.1
ATGGCAGTGTTCGAGTTCACTCTTCCAACCTTCCAAATCCCAATATTATACTATGGCCGGCCACAACATATGCATGAACCTGTGACTCCTAAGCCAATAGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTACAGAAAAGTATAGCATGCTGTAGAGAAGGCTCCTTGGAAATCAGAGTAAGATGTGGTGGACATAGCTATGAAGGAACTTCCTCTGTTGCTGATGATGGGACTCTTTTTGTGATTATTGACATGATGAATTTAAACCATGTTTGGGTGGATATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACCTTGGGAGAGACTTACTATGCAATCTCTCAGGCAAGTGATGTACATGGATTCTCAGCTGGGTCATGTCCAACTGTAGGAGTTGGGGGGCATATAGGTGGTGGTGGATTTGGGTTAATGTCTAGAAAATATGGACTTGCAGCAGACAACGTGGTGGATGCCCTTCTTGTTGATGCCAATGGACAATTGTTAGACCGTGAAACCATGGGAGAAGATGTGTTCTGGGCTATTAGAGGAGGAGGGGGTGGTCTTTGGGGAGTTGTCTATGCCTGGAAAATCCAGGTGTTGAAAGTGCCCCAAATTGTAACTGGTTTCATTGTGTCTAGAACAGGCACAAAAAGTCATGTTACCAAGCTAGTTTATACATGGCAATGTGTGGCACCCTACTTGGAAGATGATTTCTACTTGTCATGCTTTGTTGGTGCTGGCTTGCCTGAAGCTAAAGCAGTAGGCTTATCGGCAACATTTAAAGGGTTTTATCTCGGTCCAAGGGCCAGGGCCATATCTATCCTAAACCATGCTTTTCCTGAACTGGATATTGTAGAAGAAGAATGTAGAGAAATGAGTTGGATTGAGTCAATTGTTTTCTTCTCTGGCCTAGGTGATGGAGCCTCGGTCTCTGACTTGAAGAATAGGTATCTGCAAGATANAGAATATTTCAAGGCCAAATCAGACTTTGTAAGGAAACATGTTCCTCTTGTAGGCATACAAACTGCACTGGACATCCTTGAAAAGGAGCCTAAAGGGTATGTTATTTTGGACCCTTATGGTGGGATGATGCATACTATAAGCAGTGAATCCATTGCTTTTCCCCACAGAACAGGAAACCTGTTTACAATTCAGTACCTGATATATTGGAAAGAAGCNGACAATGACAAAAGCAGCGATTATATTGATTGGATAAGAGGGTTCTATGCTTCTATGACTCCTTTTGTTTCATGGGGTCCAAGGGCTGCATATATTAATTACATGGACTTTGATCTTGGAGTAATGGAGCGGNTTAGCAATGGTGCTGCTAATATGATAGATGCTGCGGATAAAGCAAAGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGACTGGTGAGGGCCAAGTATCTGATTGATCCTAACAATGTTTTCACCAATGAACAAGGCATTCCTCCTATGCCGTTTACCAGTCCCAATGCCAAAGCACTGAGTACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	83162	85019	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	AA7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012446.1	PF01565.18	FAD_binding_4	32	171	1.30E-31
Glyur000129s00012446.1	PF08031.7	BBE	425	489	4.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.249
SRR1783600	control	0.291
SRR1783602	moderate drought stress	0.752
SRR1811619	moderate drought stress	0.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.787
DRR006520	Root Summer glycyrrhizin high producing strain	0.762
DRR006521	Root Winter glycyrrhizin high producing strain	0.221
DRR006522	Root Winter glycyrrhizin high producing strain	0.289
DRR006523	Root Summer glycyrrhizin low producing strain	0.291
DRR006524	Root Summer glycyrrhizin low producing strain	0.291
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.796
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.857

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.611
SRR2868004	Drought Stress (root)	1.796
SRR2967015	Control (root)	1.512

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.417
SRR9715740	Leaf	0.635
SRR9715741	Leaf	1.339
SRR9715739	Root	0.000
SRR9715742	Root	0.020
SRR9715743	Root	0.154

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.763
SRR8749028	MeJA induced 9h	0.616
SRR8749029	MeJA induced 9h	0.827
SRR8749030	Uninduced	0.595
SRR8749031	Uninduced	0.552
SRR8749032	Uninduced	0.884

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.926
SRR8400027	Control - Root	0.744