Gene detail information of Glyur000129s00012442 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G37380.5 | 4.00E-47 | Chaperone DnaJ-domain superfamily protein |
| NR | XP_010656013.1 | 4.85E-68 | PREDICTED: dnaJ homolog subfamily B member 12-like [Vitis vinifera] |
| COG | YP_684744.1 | 7.00E-11 | chaperonin Hsp40 [Methanocella arvoryzae MRE50] |
| Swissprot | tr|Q9FH28|DNJ49_ARATH | 2.00E-13 | Chaperone protein dnaJ 49 |
| trEMBL | tr|F6HGB6|F6HGB6_VITVI | 4.00E-69 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51309.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00129 | 66324 | 66728 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000129s00012442.1 | PF00226.26 | DnaJ | 66 | 123 | 4.70E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.162 |
| SRR1783600 | control | 0.174 |
| SRR1783602 | moderate drought stress | 0.188 |
| SRR1811619 | moderate drought stress | 0.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.268 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.484 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.703 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.654 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.168 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.279 |
| SRR2868004 | Drought Stress (root) | 1.799 |
| SRR2967015 | Control (root) | 2.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.437 |
| SRR9715740 | Leaf | 6.181 |
| SRR9715741 | Leaf | 2.902 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.654 |
| SRR9715743 | Root | 0.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.533 |
| SRR8749028 | MeJA induced 9h | 14.867 |
| SRR8749029 | MeJA induced 9h | 7.323 |
| SRR8749030 | Uninduced | 12.835 |
| SRR8749031 | Uninduced | 25.454 |
| SRR8749032 | Uninduced | 18.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.834 |
| SRR8400027 | Control - Root | 0.965 |