Gene detail information of Glyur000129s00012439 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10250.1 | 3.00E-66 | HSP20-like chaperones superfamily protein |
| NR | XP_007143922.1 | 5.49E-99 | hypothetical protein PHAVU_007G113700g [Phaseolus vulgaris] |
| COG | YP_005887446.1 | 1.00E-22 | heat shock protein Hsp20 [Marinobacter adhaerens HP15] |
| Swissprot | tr|P30236|HSP41_SOYBN | 2.00E-97 | 22.0 kDa class IV heat shock protein (Precursor) |
| trEMBL | tr|V7BHH5|V7BHH5_PHAVU | 2.00E-99 | Uncharacterized protein {ECO:0000313|EMBL:ESW15916.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00129 | 63611 | 64222 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000129s00012439.1 | PF00011.16 | HSP20 | 78 | 181 | 3.90E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.746 |
| SRR1783600 | control | 12.037 |
| SRR1783602 | moderate drought stress | 39.064 |
| SRR1811619 | moderate drought stress | 39.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.127 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.795 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 225.285 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 218.428 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.392 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.068 |
| SRR2868004 | Drought Stress (root) | 2.472 |
| SRR2967015 | Control (root) | 0.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.218 |
| SRR9715740 | Leaf | 0.561 |
| SRR9715741 | Leaf | 0.107 |
| SRR9715739 | Root | 4.729 |
| SRR9715742 | Root | 4.051 |
| SRR9715743 | Root | 4.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.286 |
| SRR8749028 | MeJA induced 9h | 0.416 |
| SRR8749029 | MeJA induced 9h | 1.098 |
| SRR8749030 | Uninduced | 0.091 |
| SRR8749031 | Uninduced | 0.188 |
| SRR8749032 | Uninduced | 0.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.187 |
| SRR8400027 | Control - Root | 15.106 |