Gene detail

Gene detail information of Glyur000129s00012437

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38520.1	1.00E-127	alpha/beta-Hydrolases superfamily protein
NR	XP_007143923.1	0	hypothetical protein PHAVU_007G113800g [Phaseolus vulgaris]
COG	YP_007104040.1	8.00E-77	alpha/beta fold family hydrolase [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|Q9FFZ1\|PPH_ARATH	5.00E-21	Pheophytinase, chloroplastic (Precursor)
trEMBL	tr\|V7BDL7\|V7BDL7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15917.1}

Sequence

Transcript Sequence

>Glyur000129s00012437.1
ATGGAAGTGATGACAAGTGCTGTTCATTCTGCAGTTGGGTTTCTGCATTTGCAAGTACGCTCTTCTTCACACGTTGAAAGTAAAGCCTTCTTCGTATCCACAGCACGAAGGAATGCTCCTTTTCCTTGTTATTATCTTCATCCAAACCACTTAAGCAAAGGCAATAATAGTAAAGGTGTCATCGTCATCAACTCCACTTCAGCTACTACAACTACTTCCACAGCAACTTCTGATGGGTCCCTTTCCGAGGTGGAAAAGATAAAGCAGAGATGCCTTACATGGCAGTGGAAGGGTCAGTATTCCATCAACTATTTTGTTTCTTCTTCTGATTCAGAATATTCTCCTCAGCAGAACCACCCTCCTCTGTTACTTGTCCATGGCTTTGGTGCCTCCATTCCTCACTGGCGCAGGAATATCAAGATACTGGCCCAAAATTATACTGTTTATGCTATTGATCTTCTTGGTTTTGGGGCTTCAGATAAGCCCCCAGCCTTTTCATATACCATGGAAACATGGGCTCAGTTGATTCTGGATTTCTTGGATGAAATTATTCAGAAGCCAACTGTGCTAATAGGAAACTCTGTTGGAAGTCTTGCTTGTCTCATTGCTGCCTCAGATTCAAGTCAAACTCTTGTTAGAGGAATTGTGCTGTTAAATTGTGCTGGTGGCATGAACAACAAAGCAATTGTTGATGACTGGAGGATCAAGTTACTATTACCCTTGCTTTTGCTGGTTGACTTTTTATTGAAGCAAAAGGGAATTGCCTCAGCAATTTTTGAGCGTGTTAAACAGAGAGAGAATTTGAGGAACGTTTTGAGTTCAGTGTATGGAAATAAGGAGTCTGTGGATGAAGAACTTGTGGAGATCATTAGGGGGCCAGCAAATGATCCAGGGGCCTTAGAGGCATTTGTGTCCATAGTAACAGGGCCACCGGGGCCTAATCCGGTGCAGTTGGTGCCAAAAATCTCCTTGCCCATTCTACTTCTATGGGGAGATCAAGACCCCTTTACTCCAATTGACGGACCTGTTGGCAAGTACTTTTCTTCATTGCCTTCTCAAAGAGAAAATGTTAAACTCTTCATGCTTGAAGGGGTTGGACATTGTCCCCATGATGACAGGCCTGACTTAGTCCATGAGAAATTGCTTCCCTGGTTGGCCAGTCTTCCAAATTCATAGCAGAGACGTGAAGTACTCACAAACTGCAACCAAGTTGTTGAAACCTTTTATAGTATATATTCCATCCTCTAAAACTGCCACTTATATTCTATCTGTATAGATTATGTTCATTATTTATTTGTGTTAATTACACCACCAACTATCTTGGCAGATAGATTATGTGCAATAAGCATGTAAGTAAGGCTTTCTTTTGGTTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	59102	61788	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012437.1	PF12697.2	Abhydrolase_6	122	379	4.60E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.608
SRR1783600	control	0.632
SRR1783602	moderate drought stress	0.527
SRR1811619	moderate drought stress	0.572

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.176
DRR006520	Root Summer glycyrrhizin high producing strain	1.088
DRR006521	Root Winter glycyrrhizin high producing strain	0.686
DRR006522	Root Winter glycyrrhizin high producing strain	0.615
DRR006523	Root Summer glycyrrhizin low producing strain	2.880
DRR006524	Root Summer glycyrrhizin low producing strain	2.787
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.322
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.007

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.494
SRR2868004	Drought Stress (root)	4.479
SRR2967015	Control (root)	2.341

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.890
SRR9715740	Leaf	48.604
SRR9715741	Leaf	32.525
SRR9715739	Root	0.249
SRR9715742	Root	0.570
SRR9715743	Root	0.585

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.756
SRR8749028	MeJA induced 9h	0.990
SRR8749029	MeJA induced 9h	1.622
SRR8749030	Uninduced	0.139
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.130

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.976
SRR8400027	Control - Root	2.050