Gene detail

Gene detail information of Glyur000129s00012435.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_007143926.1	hypothetical protein PHAVU_007G114100g [Phaseolus vulgaris]
Swissprot	tr\|Q9C810\|Y1342_ARATH	PHD finger protein At1g33420
trEMBL	tr\|V7BEA4\|V7BEA4_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW15920.1}

Sequence

Transcript Sequence

>Glyur000129s00012435.1
GTAAATTTTTTTGAGGGGTTTTTTAAGCCTTATCAGTTAATAAACCTTTTCCAAAACAAGCGAGTGCCAGTGNCATTTTACGAAAAGAGCTTGGTCTAATTTGCCTTGCCATTAATGGTGGTAAAACTCGCTTAACGGCTAAGCTTACGATCCTTGAAATTCTCTCCCCTCTAATTTTCCCCGAACAGACTCTCGGTTTTCTCGTGAGTTCCCCAGAAAGAATATTTCCTTTTCCTTTTCCTTTTCCCTTTTCTTCTCCTTCGTACTCTTTCCAAAATTATAAGAATATTTAATTCTCAGCATATTATATATGTAAATTTCAAAATATTGACCGCAGATTAATCCAACGACGACTATCAAATCTCACTATCTCAGTATCCAAACAGAAAAACACATCCAAACCCTAATCCAAACGATCGTTCCCTCCCTCTCCCTTACCCCCCCTCTCTCTCTCTCTATATTTATCCTCTCTCTCTCCTTCGTCGTTCCTCTTTCCCCCGTCCGATTCCTCAGCCACACCACCAGATCCAGAAGCTTCCATCCCTCTCCGTTGAGATCTAACCTCACGCGCCCCCAACGCTGGACCACGCGCCNGTAACCGCATCAAACATGGTCGTGAGCGGAGGGAAGCCCCTGAANCGCATGAAGAGGAGAGTCACCGCCGATTTCTACGACTTCTTCTCGTTCCCCTCGCCGTCCCTCGCCGCCTCNGAAAACTTCTCCGGCGGACCCTTCCGGACCAACGTACGATCCTTCCTCACGAAGCACGCGCTNCTCCCGCCGCCTTCGGCGCTGTTCCCCCACCTGCTGACGTGGCAGATCCTCTTCCGTGTCGGCGAGCTCACCGACGGCCCCGATTCGGGACCGGCGGTGGTGTGCCTCGACGTCGTGGAAGAGGACGTGGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCACCCCGTGTGTGGGAAACGATACCATTTCATAATCAAAGCTGATGGGAGCTCCATTGGTGGATACCACAAACCATGTATGTGCTGTGGAGATATCTTGCATTTGTCAGAGTCCAAGTGTAAATCATGCAACCATGTGACAACCACTGATGACGTCGAAGACTGGGTGTACCACCAATTAGAGANCACGACTCATCTTTTGCATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAAACACTTGGAGTTAGGAGAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGAGTACCGCTTGCTCCATGCCATTATGAAGGGACATCCGTGGTATGGTGACTGGGGTTATAATTTTGGCTCTGGTAGCTATTGTCTCACACAGGAAGCATATAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCCTGTCCATCTTCTTCTCCCAGGGACAAATGCCCCCCTCCCGTGTGCAGGACATGATCTCATTTTACCAGTCTTTGTCTGAGCATGAGCTTGTAAATATGAGGGACCTGTTTTGTTTTTTGATGGGTTTGATGCATGATGCTCGCAAGACTGCGTCAAAAGTTGATGACATAACCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTATCAAGTTCTTGGGAGAAGAGTGATGTTGAACGTGTGGAGGAAGCCATGCTCAGGGTACTGCGTGCGGTGTCCGGGTCTAATTGGGTGAGCTGGCGTGCTCTTAGGGGTGCTGTTTGCAAGGTGGCTTCTCCAGAGCTGCTNGAGTATTGCCTTGGAGAACTGGGAGGCAAAATGGTCTATGGTGGAATGTTTGTTAATAGCCGATGCAATCCTCAATCTGGAGTTTATGAATTCAGACTCGANGCTGCAAATGGTTCTTGCTATGGATTTATGGCCAACAATGATTCTTCAGGCTCAAAGTATCCATCTGAAGAGAATCTCCTACAATGGTTGAGATATTTATACGATTCTTTGCTTCATCCTCAGATGATGTTTAACTATGTTGAAGAAGGGATAAGAACTCTTGCAATGAGCTCAGCTCAGAAGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTNTCCTGAGATGTTTCCAATGTCAGATTTGTACAAAATACGCATCTCATGTCAGGTTGAGCTAGTGGACGATTCTGANGATTCTGAAGCTAGAACCCCACCAGAATTACTTGTGCTGCCCGTGAATGCCACGGTGTCCGACCTCAAGATTGAAGCAGCAAATGCTTTTCAAGATGTATATCTAATGTTTAGAAGATTTCAAGTTGATGAGCTAGTTGGCTATAGTGGTGTAGANGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGAAGGGGTTTGTGTCCGTGGAAGATGCATTGGGAAGAATGGGTTGAGCAAATTTCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGAGTGTACCTGTGGGGCTAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATGTATGTGGGGTGTGGCGGCACACTAGGTGTTCTGGCATTCCAGATGCTGATCCTGTTCCAGCACGTTTTGTGTGCCCAAGATGCCACAACTCTGACTCAAAGCCTAAATCTGGTGGGCACTGTAAAGATGAGAATGTGACTAACGTTAGTGCTAGTAGTAGNTGCTTCGGAAACGGCTTGCCGGTTGTTCGTTAAGTCATTTGACTAGATGTGTATAAAAAAAGAAGCTTTGTTTTCGTTTCTTTTGCTGCTTCGGCCTGAAGGAACCTGTACATAACAGATAGGCCTCATAGAACAGGGCGTTTCTTGTTCACAATTTCAGGTTCTCCTTTCTTCGTTTGTTTATTCTGTGTATATATACATTACAGTGACTGACGGGAACATGTGGAGGGAAGAAAACAATATCTAACTTTAATGGCCTCCAATAGAAATGTAACTTCTCCGGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	40768	47165	-

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012435.1	PF00628.24	PHD	628	674	4.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.990
SRR1783600	control	22.095
SRR1783602	moderate drought stress	24.540
SRR1811619	moderate drought stress	24.235

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.806
DRR006520	Root Summer glycyrrhizin high producing strain	18.949
DRR006521	Root Winter glycyrrhizin high producing strain	20.812
DRR006522	Root Winter glycyrrhizin high producing strain	20.176
DRR006523	Root Summer glycyrrhizin low producing strain	21.967
DRR006524	Root Summer glycyrrhizin low producing strain	22.135
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.399
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.418

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.464
SRR2868004	Drought Stress (root)	40.451
SRR2967015	Control (root)	41.175

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.080
SRR9715740	Leaf	6.606
SRR9715741	Leaf	9.714
SRR9715739	Root	12.254
SRR9715742	Root	14.365
SRR9715743	Root	13.599

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.865
SRR8749028	MeJA induced 9h	18.230
SRR8749029	MeJA induced 9h	11.255
SRR8749030	Uninduced	7.365
SRR8749031	Uninduced	14.090
SRR8749032	Uninduced	18.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.743
SRR8400027	Control - Root	23.723