Gene detail

Gene detail information of Glyur000129s00012434

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33420.1	1.00E-126	Peroxidase superfamily protein
NR	XP_004495440.1	0	PREDICTED: peroxidase 47-like [Cicer arietinum]
Swissprot	tr\|Q9SZB9\|PER47_ARATH	1.00E-161	Peroxidase 47 (Precursor)
trEMBL	tr\|A0A072VLG5\|A0A072VLG5_MEDTR	0	Peroxidase family protein {ECO:0000313\|EMBL:KEH42844.1}

Sequence

Transcript Sequence

>Glyur000129s00012434.1
CAGTTCTTAGGTTTTGGGATCATATCATAAATCATATACAGCATATATATAAACATATATATAATTTGCCTGTGCTAATTATTCGTCAAGATGNTTTATAAATCATCAATGAAGTCTTTGAAAATGTCAATGGCTAAATTGGTGACAGTGTTTTTGCTAATAGAGGTGATAGCATGCGGGTTCGGATTCGGATTCGGATACGGATTCGGAGCAGGTGGTGGCTTAGACATGAACTACTACTTGATGAGCTGTCCTTTCGTTGAACCNGTTGTTAAGAACGTTGTCAACAGAGCCTTGGAGAATGATCCTACCCTCGCAGCTGGTCTCATCAGAATGCACTTCCATGACTGCTTCATTGAGGGATGTGATGGGTCGGTTCTGGTTGACTCCACTAAGGACAACACAGCAGAAAAGGATTCACCAGCAAATTTGAGCCTGAGAGGGTTCGAAATCATAGATGAAATCAAAGAAGAGCTTGAAAGACAATGCCCTGGCGTGGTTTCATGTGCTGATATTCTTGCTATGGCTGCTAGAGATGCTGTCTTCTTTGCTGGAGGACCAGTGTATGACATACCCAAAGGGAGAAAGGATGGAAGAAGATCCAAAATTGAGGATACTATCAATTTGCCATTCCCTACCTTCAATGCCTCTGAGCTCATTAGTCTCTTTGGCAAACATGGTTTCTCTGCACAAGAGATGGTGGCTCTCTCTGGGGCTCATACACTAGGAGTGGCAAGGTGTGCTTCTTTCAAGAACAGATTGAGCAGCCAAGCGGACCCAACTCTGGATTCAGAATTTGCCAAGACACTGTCCAAAACATGCAGCTCTGGAGACAGCGCAGAGCAACCGTTCGATGCAACGAGGAACGACTTTGACAACGTTTACTACAACGCTCTGTTGAGGAGGAATGGGGTTCTCACATCAGACCAAACACTCTACACCAGCCCCAAAACGAGGAACATCGTGAATGCTTATGCATTCAACCAAGCCCTGTTCTTCCTTGATTTCCAACAGGCAATGGTCAAGATGGGCCTCCTTGATATCAAACAAGGCTCCAGTACTGGTGAAGTGCGACAAAATTGCCGCAAATTAAACTGAGATCGATCATGTGAAAATGAAATTAGCTAGATATGGGTTTGTAATTGTTTAATTTGGAGCTTTTGACCAGGGCAAACTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	35717	37945	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012434.1	PF00141.18	peroxidase	61	296	6.60E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.570
SRR1783600	control	5.667
SRR1783602	moderate drought stress	4.919
SRR1811619	moderate drought stress	4.823

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.210
DRR006520	Root Summer glycyrrhizin high producing strain	20.247
DRR006521	Root Winter glycyrrhizin high producing strain	0.283
DRR006522	Root Winter glycyrrhizin high producing strain	0.276
DRR006523	Root Summer glycyrrhizin low producing strain	18.429
DRR006524	Root Summer glycyrrhizin low producing strain	18.419
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	110.672
SRR2868004	Drought Stress (root)	153.343
SRR2967015	Control (root)	195.109

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.714
SRR9715740	Leaf	1.157
SRR9715741	Leaf	1.027
SRR9715739	Root	12.782
SRR9715742	Root	50.041
SRR9715743	Root	40.492

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.498
SRR8749028	MeJA induced 9h	4.091
SRR8749029	MeJA induced 9h	3.372
SRR8749030	Uninduced	1.998
SRR8749031	Uninduced	1.011
SRR8749032	Uninduced	0.483

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.183
SRR8400027	Control - Root	14.091