Gene detail

Gene detail information of Glyur000128s00010812.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10530.1	2.00E-135	Concanavalin A-like lectin protein kinase family protein
NR	XP_003550213.1	0	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Glycine max]
COG	YP_003797670.1	2.00E-25	putative serine/threonine protein kinase [Candidatus Nitrospira defluvii]
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	0	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|I1MX00\|I1MX00_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G33370.1}

Sequence

Transcript Sequence

>Glyur000128s00010812.1
GGATGATGGCTGCGCACGGCTAGCATCATAGCAGCAATTCCATTTGCAAGTTTGCAATCGCAAGCCAACCACCATGTCCCATAACTGCTCCTCCATGGTTGTTGTTGTTGTTGTTGTTCTTCCTCTTCTTCTTGTGCTCACTTTTTCTTCCCTCCCAACAACAACCGATTCACTATCCTTCAAAATAACCAACTTCGATGACCCCAGCGTCGCGAGCAACATGGCTTACGAGGGTGACGGAAGATCCAGCAACGGCTCCATTGACCTCAACAAGGTGAGCTACCTCTTCCGCGTGGGGAGAGCACTCTACGCAGAGCCCTTACGCCTGTGGGACCCACCCTCCAGGACCCTCACCGACTTCACCACCCGCTTCACCTTCACCATCGACAAGGTAAACGACACGTACGGCGACGGCTTCGCGTTTTACTTAGCCCCCGTGGGTTACCAAATCCCTCCGAACTCCGCCGGCGGCACCTTCGCGCTCTTCAACGCCACCACCAACAGCAACCTCCCCCAGAACCACGTTGTCGCCGTCGAGTTCGACACGTTCGTGGGGTCCACCGACCCNCCAATGCGCCACGTGGGAATCGACGACAACTCCCTCACCTCCGCCGCCTTTGCCAGGTTTGACATCGACAGGAACCTCGGAAACCCCTGTCACGTGCTCATCACCTACAGTGCTTCCACGAGGACCCTCGCGGTGTCTTGGTCATTCAACGGACGCGTGGCAGCCACGGGTCTGGATCCGAATTCTTCACTGTCTTACCAGATTGACCTGATGCAAATTCTACCCGAGTGGGTGAACATTGGGTTCTCAGCTTCAACGGGTCTTTCCACTGAAAGCAACGTTATTCACTCTTGGGAGTTTAGTTCAACATTGAACTCTTCCACGGGCGTGTTGGGGAAGAGTAAAGGGTCGAAGTCAAAAACGGTAATTGTGGTTGTCGTTGCGGTGGGTTGTACCGTCGTTTTGTTGGGTTGTGTTGTTATTGGTTGGTTTATAATGATGAAGAGGAAAAGAAGGGATTTTGATGGGGAAAATGAAGAGGGACCCATTTCGGCGAAGTTTGATTTGGATAAAGGAACAATACCGAGAAGGTTTGATTACAAGGAACTGGTTGCAGCTACTAATGGTTTTGCAGATGATAGGAGGCTAGGAAGAGGAGGTTCAGGTCAAGTTTACAAAGGGACTTTGACTTATCTAGGAAGGGTTGTTGCAGTGAAGAGGATATTCGCTGACTTCGAGAATTCAGAGAGGGTTTTCATCAACGAGGTTAGGATCATAAGCCGTTTGATACACAAAAACCTTGTTCAGTTCATTGGGTGGTGTCATGAGGAAGGAGACTTCCTCTTAGTTTTTGAGTACATGTTCAATGGAAGCCTTGACTCTCATTTGTTTGGTGACAAAAAGACTCTGGCTTGGGATGTGAGGTACAAAGTGGCTTTGGGTGTTGCCAATGCGATTCGGTATCTCCACGAGGATGCAGAGCAGTGTGTTCTTCATAGGGATATTAAGTCAGCCAATGTGTTGCTTGACACTGATTTCAGCACAAAGCTTGGTGATTTTGGGATGGCTAAGTTGGTGGATCCAAGGTTGAGGACTCAGAGAACAGGTGTGGTAGGGACATATGGGTATTTGGCACCTGAATATATTAATGGAGGGAGGGCAAGTAAGGAATCAGATGTTTACAGTTTTGGGATTGTGGCATTGGAGATTGCTAGTGGGAGGAGGACTTATCAAGATGGGGAGTTCCATGTGCCACTGTTGAATTGGGTGTGGGGGTTATATGTGGTAGGGAATGTTTTGGGTGCTGCTGATGAGAGGTTGAAGGAGGAGTTTGATGTGAATCAGATGAGGAGTTTGCTCATTGNTGGGTTGTGGTGTACACACCCAATTGATAAGGAGAGGCCTAAGGCTGCTCAGGTGATTAAGGTTCTTCAGCTTGAAGCTCCACTACCTGAGCTTCCACTTGATATGCATGATCGTGCTCCTCCTCTTCAAAGGTTTACGCAGCAGCAACAACAACAACAACCCAATAATAATTACTCCTTGCAATCACCACCCATCACTGATAGCCTTCTTAGTGTGGGACGTTAATTAATTGCTTTGCTGTGTTTGCCTTTTTATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00128	284754	287075	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000128s00010812.1	PF00139.14	Lectin_legB	33	266	7.20E-56
Glyur000128s00010812.1	PF00069.20	Pkinase	358	558	1.90E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.999
SRR1783600	control	0.998
SRR1783602	moderate drought stress	3.870
SRR1811619	moderate drought stress	3.981

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.867
DRR006520	Root Summer glycyrrhizin high producing strain	3.685
DRR006521	Root Winter glycyrrhizin high producing strain	30.706
DRR006522	Root Winter glycyrrhizin high producing strain	30.218
DRR006523	Root Summer glycyrrhizin low producing strain	6.968
DRR006524	Root Summer glycyrrhizin low producing strain	7.489
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.782
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.854

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.057
SRR2868004	Drought Stress (root)	28.801
SRR2967015	Control (root)	32.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.631
SRR9715740	Leaf	3.480
SRR9715741	Leaf	20.057
SRR9715739	Root	10.389
SRR9715742	Root	11.842
SRR9715743	Root	10.912

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.306
SRR8749028	MeJA induced 9h	42.653
SRR8749029	MeJA induced 9h	24.320
SRR8749030	Uninduced	27.692
SRR8749031	Uninduced	41.392
SRR8749032	Uninduced	21.343

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.336
SRR8400027	Control - Root	11.385