Gene detail

Gene detail information of Glyur000128s00010799.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19810.1	2.00E-75	Glycosyl hydrolase family protein with chitinase insertion domain
NR	XP_004498784.1	0	PREDICTED: chitotriosidase-1-like [Cicer arietinum]
COG	YP_007146068.1	6.00E-43	chitinase [Cylindrospermum stagnale PCC 7417]
trEMBL	tr\|I1MWY7\|I1MWY7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G33190.1}

Sequence

Transcript Sequence

>Glyur000128s00010799.1
CTTTTATCATTGATCTAGACCCTTTTGACTTGTATTATATTGGTTACCTAGTCCAATTTTTGTTCCCTTGTGTTTGATTTGTTCCCTCTATCACATATCCCTATAGTGGAACATTCAAAGTTTCAAACCCCACTCCTCACAAGAGTTTCATCATAACATTCCAATTTTGCAATTGCAACACCACCNAGTATATATAAATATCAACAATGCTTCTCCTTCGATAAAAATTAACCACATAAACCATGGCCGTCCAAATGATCATCACAATTATGACACCCCTTTTGGTTCTTCTAATGAGCCTTCAATCCCAATATGCATTTGCTGAATCTTCTTCTAATAATTGGCGATACCCACCAATTAACGGTGGTGGTGTTAGAGCTGCATATTGGCCTTCGGGTGATGATTTTTCACCTTCTTCCATTAACACAAACTACTTCACTCACATCTATTACGCCTTTATCCAACCCGAACCCGAATCCTTTGAGCTTCTCATCACCGACTCCGACAAAGAGTGGATANCAAAGTTCATCAACGGGCTCCGTTATCGTAACCCACCGGTGAAGACCCTCTTTTCACTCGGAGGAGGTGGCAACAATGCAACCCTCTTCTCAGAGATGGCNAGCACCAAGCGAAACCGACAACGCTTCATCTCCTCTACCATCCACGTGGCACGAAAATACGGCTTCGACGGCNTTGACTTGGATTGGGAATTCCCCGCTGACCAAAAAGACATGTCTAACCTCGCTTTGTTGTACCANGAATGGCACCGAGCCTTGGTGTCCGACGCTCAGGTTCGGAGGAAGCCGCGCTTGCTTCTGACCTCCGCNGTGTACTACAACTCCACGATAAGGCTCATCGGTAATGGGCCGAGATCATACCCGGCCCAAGCCATTCGGGATTACTTGGACTGGGCCAGCCCAATGTGTTTTGACTATCACGGTGCGTGGGCCAATAACACGGGCTTTAACGCGGCCTTGTATGACCCGAAGTCGGAAATAAGCACCCAATTTGGGCTCGGGTCTTGGGTCAAGTCGGGTGTGCCGCCGGAGAAGTTGGTGATGGGTTTGCCGTTGTATGGGAGGACGTGGGAGTTGAAAGATCCGAAGGTTCATGGGGTTGGGGCTGAGGCGGTGGGTCCGGCGACTGATACCGATGGTACTTTGGACTATGATGAGATCTTGAAGTTTAACGAGGAGAATGGGGCTACCGTTGTGTATGATAAGGTGGCTGTGTCTTTCTATGCTTACGCGGGCACTACTTGGATTGGGTATGATGATGGGCCTTCCATAACAACGAAGGTTCGGTTTGCTAGGTCANTGGGCTTGAAGGGCTATTTCTTTTGGGCTCTTGGGAAGGACAAGGATTGGACCATCTCAAGACAAGCTTCAAATGCATGGGGACATTGACGGCTATTATGGAGTTTAATTTCNTGTAATCCTCACCCTTGAGAATTGATAATTGATACAGAATCATCACATTTGAATTAATGCTGCCGCCGTATTCTTGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00128	188627	190663	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH18

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01183	E3.2.1.14	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006032 chitin catabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004568 chitinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000128s00010799.1	PF00704.23	Glyco_hydro_18	48	372	6.90E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.672
SRR1783600	control	0.653
SRR1783602	moderate drought stress	0.257
SRR1811619	moderate drought stress	0.226

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.508
DRR006520	Root Summer glycyrrhizin high producing strain	1.492
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.826
DRR006524	Root Summer glycyrrhizin low producing strain	1.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.785
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.666

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.289
SRR2868004	Drought Stress (root)	51.606
SRR2967015	Control (root)	26.827

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.094
SRR9715740	Leaf	14.224
SRR9715741	Leaf	24.678
SRR9715739	Root	7.645
SRR9715742	Root	22.653
SRR9715743	Root	19.693

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	65.865
SRR8749028	MeJA induced 9h	302.788
SRR8749029	MeJA induced 9h	244.230
SRR8749030	Uninduced	479.441
SRR8749031	Uninduced	671.696
SRR8749032	Uninduced	380.712

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.983
SRR8400027	Control - Root	10.269