Gene detail

Gene detail information of Glyur000128s00010797

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19000.1	1.00E-88	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	KHN32374.1	0	Gibberellin 20 oxidase 1 [Glycine soja]
COG	YP_004572412.1	6.00E-46	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q39110\|GAOX1_ARATH	2.00E-48	Gibberellin 20 oxidase 1
trEMBL	tr\|C6TAL1\|C6TAL1_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU18863.1}

Sequence

Transcript Sequence

>Glyur000128s00010797.1
GAGAGATTCGTGTGTGTTTATATTTCACATGAACACCTCAACTCATTCCACTAATGCCAAAGCCTTCACATTTAAATATAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGAGAAACACAAAAAACCAACCCCCAACCACTGATTAGTGATTACCACCAACTCTAGCCTTAGCATCAACCACATGGGAGAGGTAGACCCAGCTTTCATCCAAGACCCAGAACACAGGCCTAAGCTCTCCACCATTGAAGCCAAAGGGATTCCTATAATCGACCTCTCCCCAATAATCCACCACCATGCAGTTCCAGACCCATCTTCTGCCATTGAAGGCTTAATCAAAGAGATAGGAAGTGCATGCAAGGAGTGGGGCTTCTTCCAAGTCACAAACCATGGAGTGCCACAGAGTGTGAGGCAGAGGATGGAGGAANCCTCTAGAAAGTTCTTTGCACAGAGTCTTGAGGAGAAGAAGAAGGTTGGCAGAGACGAGAGCACCCCAACGGGTTATTACGACACGGAGCATACCAAGAACGTTAGGGACTGGAAAGAAGTGTTTGATTATCTTGCCAAAGAACCCACTTTGGTTCCTGTGACTTCTGATGAAGATGATGNCCGAGTCACTCACTGGACTAATCCTTCCCCTGAATACCCTCCACAATTCAGAGTTATAATCCAAGAGTATATACAAGAGATGGAAAAGCTTGCCTTTAGGTTGTTGGAGCTGATAGCTCTGAGCTTAGGCCTTGAAGCAAAGAAGTTTGAAGAATTTTTCATTAAAGATGAAACCAGTTTTGTTAGGCTGAACCACTATCCTCCATGCCCTTACTCTCACCTCGCTCTTGGCGTTGGTCCACACAAGGACCCTGGTGCCTTAACCATTCTTGCCCAAGATGATGTTGGAGGACTTGAAGTGAGGCGTAAAACAGATCAACAGTGGGTTCTCGTTTGGAGCAATGATGCATATGAGAGTGTGGAACATAGAGTGATGGCTAACTCTCAGAAGGGAAGGTTTTCCATTCCTTTCTTCTTGTTCCCTGCACAGGACACTGAAGTCAAGCCTTTGCAGGAGCTGGTAAATGAGAAAAATCCTTCAAAATATAGGCCATACAAATGGGGCAAGTTTATTGTCAGCAGAACGACCAGCAATTTCAAGAAACAAGATGTGGAGAACCTTCAAATTTATCATTATACAAGCTAAGCTTAAAGGTAGTGTAATAATAGACGTATCACTTAGCTTGTGCATGTAAATTGGGAATAATATGTTGCAGCATATTGATCCAAGACAACGTTTCTGATACGTGACTGCAACCGAATTTGCTGCTAAAAAAAAACACTATAGTGCATTATGTATAGCATTTATCTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00128	175798	178012	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000128s00010797.1	PF14226.1	DIOX_N	26	137	7.00E-29
Glyur000128s00010797.1	PF03171.15	2OG-FeII_Oxy	202	283	2.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.738
SRR1783600	control	33.027
SRR1783602	moderate drought stress	54.086
SRR1811619	moderate drought stress	53.958

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.306
DRR006520	Root Summer glycyrrhizin high producing strain	46.610
DRR006521	Root Winter glycyrrhizin high producing strain	6.360
DRR006522	Root Winter glycyrrhizin high producing strain	6.461
DRR006523	Root Summer glycyrrhizin low producing strain	42.578
DRR006524	Root Summer glycyrrhizin low producing strain	42.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.017
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.793

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	69.018
SRR2868004	Drought Stress (root)	96.859
SRR2967015	Control (root)	71.762

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.543
SRR9715740	Leaf	93.926
SRR9715741	Leaf	71.694
SRR9715739	Root	30.764
SRR9715742	Root	36.077
SRR9715743	Root	32.529

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.673
SRR8749028	MeJA induced 9h	11.279
SRR8749029	MeJA induced 9h	3.443
SRR8749030	Uninduced	9.342
SRR8749031	Uninduced	5.789
SRR8749032	Uninduced	6.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	84.052
SRR8400027	Control - Root	61.095