Gene detail

Gene detail information of Glyur000128s00010795

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25170.1	8.00E-78	PPPDE putative thiol peptidase family protein
NR	KEH39865.1	2.56E-129	PPPDE thiol peptidase family protein, putative [Medicago truncatula]
Swissprot	tr\|Q93VG8\|PPDEX_ARATH	4.00E-64	DeSI-like protein At4g17486
trEMBL	tr\|A0A072VP31\|A0A072VP31_MEDTR	1.00E-129	PPPDE thiol peptidase family protein, putative {ECO:0000313\|EMBL:KEH39865.1}

Sequence

Transcript Sequence

>Glyur000128s00010795.1
CACCCCCAAAAAAAAACTAAAAAGAATTAAAAAGCTAAAGGCAGGGAGCAGAGCACAGTGCAAGATTCTTCTTCTTCTTCTTGTTCCGAAAGCGACGGGGAGCATCTGCTATCATATAACGATGAAGAGGAATCACTAAAATCAGAGAAAACTTCAAGGGTTATGTTCTGTCTGTGTTCCCAATATACCCTTGAATTTTCTCTAGATTTTCCATTTGGCCCAGCTAAACGTAACGCACACCCCACCATAGACAAACAAACATAAACAGGGCCATAAAGAGAAGGAGGAGCTGCTGCGGAAGAAGAAGAAAAAAAAAATCATTCATAAAAATTAATGAAAATGCTGTGTAAATTGGTCCCGTTGCCGCGGAAGAAAAAACCCGGTTCGGTTCCGGTTTANCTCAACGTCTATGATCTTACCCCAATGAATGGTTATGCTTATTGGCTTGGCCTCGGAGTTTACCATTCTGGTGTTCAAGTTCATGGTGTTGAATATGGATTTGGAGCACATGACCGGGATACTACTGGGATTTTTGAAGTGGAACCTGGAAATTGTCCAGGATTCACCTTCAGAAAATCGATTTACATTGGATCAACAGATCTGGACGCGAAGGACGTTCGNGAATTTATGGAGAAGCTAGCTGATGTGTATGCCGGGAACACCTACCATCTTATCCAAAAAAACTGCAACCACTTCTGTAACGACGTTTGTATCAGATTAACNGGGAAGTCAATCCCTCGATGGGTTAATCGACTCGCTCGGCTCGGTTTTTTCTGCAACTGCGTTCTTCCACCCAGCCTAAACGAAAAAAAGATTGGGCAAGTTACAGTNAACAGGGAAGGAGAAAAGAAGAAAATCAGAAGTCAGTCCAGCAGGTATGGGGCTTCCTCCAACCCTCGGTTGTCTTCTGACCAAAGACATTGCCTGGCTTCATCTTCGTGTATAATTAATGCATCTTCATCCTCAACCGTGACGGTAAAGTAAAGCTTTGGCAGGAGTCAGGCTCTAAAATATAGGCTGTTAGAATCATGTAAGAAACCAAACCAAANATGGGCAGGAAAGCAACTTCTTCATCTGCTCCATCTTTGTGTNCTGTTGTATATCCTTAATTACGTGGCAATGGTGAAAATGGAATGGTTGCTTCGTCACTGTTCTTTTCAATTGCGTGCTTTCTTCATTGAACNGAAAGGCTAGGCTCCTTTATTTCTGGACTTTCGGGCCACACATTTCTGAATCTTGACTTATCTATATTAGCTGCTTCTGTAGCATGTAGTAATGTATTCATTGTATTTGCTGAAGTGTGAAATAATGCAAGACAGGAAATATAAGAGACATGGTGAGTTGAAGGCAATACAGTTAAATTAGCACAAACTAGAGTCAAAATCTCTTAACCTTGTGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00128	169476	172783	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000128s00010795.1	PF05903.9	Peptidase_C97	20	153	4.90E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.313
SRR1783600	control	14.188
SRR1783602	moderate drought stress	17.838
SRR1811619	moderate drought stress	17.803

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.958
DRR006520	Root Summer glycyrrhizin high producing strain	27.058
DRR006521	Root Winter glycyrrhizin high producing strain	34.325
DRR006522	Root Winter glycyrrhizin high producing strain	33.668
DRR006523	Root Summer glycyrrhizin low producing strain	27.762
DRR006524	Root Summer glycyrrhizin low producing strain	28.036
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.877
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.761

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.042
SRR2868004	Drought Stress (root)	15.332
SRR2967015	Control (root)	23.102

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.095
SRR9715740	Leaf	17.238
SRR9715741	Leaf	18.062
SRR9715739	Root	5.096
SRR9715742	Root	8.211
SRR9715743	Root	8.252

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.394
SRR8749028	MeJA induced 9h	3.045
SRR8749029	MeJA induced 9h	1.477
SRR8749030	Uninduced	1.700
SRR8749031	Uninduced	1.347
SRR8749032	Uninduced	1.439

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.198
SRR8400027	Control - Root	24.205