Gene detail

Gene detail information of Glyur000128s00010779

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	1.00E-110	S-locus lectin protein kinase family protein
NR	XP_003598699.1	0	Serine/threonine protein kinase [Medicago truncatula]
Swissprot	tr\|O81832\|Y4729_ARATH	1.00E-128	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|G7IYX6\|G7IYX6_MEDTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000128s00010779.1
CTGATTAAATGGAACCAAAGCAAACCCACACAAAACACAATGGAGGGCCATAAGGTGTTCATGCTAAAGGTGTGCACTTTCTTGTTTTGCCTCATACCCAACACTTNCTCTAAACAGAACACTGTTACCACTATTGCTCCAAATCAGTACATCCAATACAATGAGACCCTTGTTTCTTCAGCTGGAACCTTTGAAGCAGGGTTTTTCAACTTTGGAAATCCACAACGCCATTACTTTGGCATATGGTACAACAAAAGCATATCACCAAGGACTATTGTGTGGGTTGCCAACAGAGATACCCCATTACAAAACTCAACAGCTATGTTGAAACTCACTGATCAGGGAAGTCTTGTTATTCTTGATGGCTCCAGAGGCATAATCTGGTCCTCCAATTCATCAAGAACTGCAGTGAAACCAGTTGTTGTGCAGCTTTTAGACTCAGGAAACCTTGTTGTGAAAGATGAAGCAAGCACTGAGAAGAAGAAGAAGAACCTCTTGTGGGAAAGCTTTGATTATCCTGGTGACACTTTCCTTGCTGGAATGGAGCTGAAAAGCAACTTAGTTACTGGTCCATATAAATATCTCACATCTTGGAGAANCCCTGAAAATCCTGCTGAAGGTGAGTTCTCATATAGGATTGATGTTCATGGTTTTCCTCAACTGGTTATTGCAAAGGGAGCAACAATTATGTATAGAGCAGGGTCATGGAATGGCTATCTTTTTGGTGGGGCTTCTTGGCTAAGAATGCATAGGGTCTTCAATTACTCATTAGTTTTCACTGACAAACAAGTTTCTTATGAATATGAGACTTTGGACAGTTCATTAGTTACTAGAGTGGTGCTAAATCCTAGTGGAAACTCACAGCGTTTTCTATGGTCAGATAGGACACAAGAGTGGGGAATTATAGGTACTGGTCCTGCAGACCAGTGTGAAGAATATGCCTTGTGTGGTGTCAACTCNAACTGCAATGTTAATGACTTCCCAATGTGTGAATGCTTGGAAGGTTTCATACCAAAATTTCAAGCAAAGTGGGACTCATCAGATTGGTCTGGTGGGTGTGTGAGGAGAACAAAATTAAGTTGTCTCAGTGGAGATGGCTTTTTGAAGTACACAAGCATGAAGTTGCCAGACACGTCATCGTCATGGTTTGACAAGAGCTTGAGCCTTGAGGAATGTGAGAAACGGTGTTTGAACAACTGCTTTTGCACTGCTTATGCAAATTTAGATGTCAGAGATGGAGGGAGTGGCTGCTTGATATGGTTTCATNACATTGTGGACATGAGAAAACACAGAGACCAAGGAGAAGACATTTACATACGACTGGCATCTTCAGAACTTGATCATATAAGGGATAAGAGGAACTTCAGTACAAAGAAGCTTGCTGGGACTATTGCAGGAGTTATTGCATTCATTATAGGACTAACAGTTCTTGTATTGGCCACATCAACATTTATCAAAAGGAAGAAGCTTGGTAATCCAGGTGAAAAATTTATGATAATTAAACTCCAAATATTTATCATATTATATAGTCCAATAGTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00128	76796	78639	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000128s00010779.1	PF01453.19	B_lectin	89	204	2.10E-31
Glyur000128s00010779.1	PF00954.15	S_locus_glycop	231	339	6.90E-27
Glyur000128s00010779.1	PF08276.6	PAN_2	361	427	5.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.128
SRR1811619	moderate drought stress	0.098

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.070
DRR006520	Root Summer glycyrrhizin high producing strain	0.070
DRR006521	Root Winter glycyrrhizin high producing strain	0.145
DRR006522	Root Winter glycyrrhizin high producing strain	0.114
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.140
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.118

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.427
SRR2868004	Drought Stress (root)	1.587
SRR2967015	Control (root)	0.905

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.854
SRR9715740	Leaf	6.332
SRR9715741	Leaf	14.665
SRR9715739	Root	0.000
SRR9715742	Root	0.080
SRR9715743	Root	0.343

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.625
SRR8749028	MeJA induced 9h	8.760
SRR8749029	MeJA induced 9h	3.231
SRR8749030	Uninduced	9.688
SRR8749031	Uninduced	8.303
SRR8749032	Uninduced	1.705

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.483
SRR8400027	Control - Root	0.288