Gene detail information of Glyur000128s00010771 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29050.1 | 2.00E-111 | TRICHOME BIREFRINGENCE-LIKE 38 |
| NR | XP_003537664.1 | 0 | PREDICTED: protein YLS7-like [Glycine max] |
| Swissprot | tr|Q8VY22|TBL38_ARATH | 5.00E-137 | Protein trichome birefringence-like 38 |
| trEMBL | tr|I1LI62|I1LI62_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G08660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00128 | 43430 | 46737 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000128s00010771.1 | PF14416.1 | PMR5N | 27 | 79 | 1.20E-19 |
| Glyur000128s00010771.1 | PF13839.1 | PC-Esterase | 80 | 353 | 3.40E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.628 |
| SRR1783600 | control | 6.796 |
| SRR1783602 | moderate drought stress | 3.030 |
| SRR1811619 | moderate drought stress | 3.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.608 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.600 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.161 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.206 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.476 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.624 |
| SRR2868004 | Drought Stress (root) | 37.219 |
| SRR2967015 | Control (root) | 22.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.698 |
| SRR9715740 | Leaf | 0.786 |
| SRR9715741 | Leaf | 0.428 |
| SRR9715739 | Root | 1.275 |
| SRR9715742 | Root | 9.644 |
| SRR9715743 | Root | 7.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.266 |
| SRR8749028 | MeJA induced 9h | 0.256 |
| SRR8749029 | MeJA induced 9h | 0.096 |
| SRR8749030 | Uninduced | 1.862 |
| SRR8749031 | Uninduced | 0.326 |
| SRR8749032 | Uninduced | 0.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 52.953 |
| SRR8400027 | Control - Root | 67.439 |