Gene detail information of Glyur000127s00009200 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35180.2 | 0 | Protein of unknown function (DUF1336) |
| NR | XP_003549700.1 | 0 | PREDICTED: uncharacterized protein LOC100780025 isoform 1 [Glycine max] |
| Swissprot | tr|F4JSE7|EDR2_ARATH | 3.00E-82 | Protein ENHANCED DISEASE RESISTANCE 2 |
| trEMBL | tr|I1MTY2|I1MTY2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G11250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00127 | 305374 | 324758 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000127s00009200.1 | PF01852.14 | START | 235 | 332 | 0.00015 |
| Glyur000127s00009200.1 | PF07059.7 | DUF1336 | 503 | 708 | 1.50E-76 |
| Glyur000127s00009200.2 | PF01852.14 | START | 235 | 332 | 7.70E-05 |
| Glyur000127s00009200.3 | PF07059.7 | DUF1336 | 42 | 247 | 1.10E-77 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.620 |
| SRR1783600 | control | 13.616 |
| SRR1783602 | moderate drought stress | 12.370 |
| SRR1811619 | moderate drought stress | 12.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.910 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.850 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 64.611 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 62.631 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.237 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.056 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.330 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.963 |
| SRR2868004 | Drought Stress (root) | 36.751 |
| SRR2967015 | Control (root) | 28.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.195 |
| SRR9715740 | Leaf | 18.865 |
| SRR9715741 | Leaf | 27.379 |
| SRR9715739 | Root | 2.311 |
| SRR9715742 | Root | 13.112 |
| SRR9715743 | Root | 10.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.466 |
| SRR8749028 | MeJA induced 9h | 15.691 |
| SRR8749029 | MeJA induced 9h | 4.889 |
| SRR8749030 | Uninduced | 10.118 |
| SRR8749031 | Uninduced | 3.618 |
| SRR8749032 | Uninduced | 3.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.154 |
| SRR8400027 | Control - Root | 19.498 |