Gene detail

Gene detail information of Glyur000127s00009195

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02050.1	0	sugar transporter protein 7
NR	KEH16381.1	0	sugar porter (SP) family MFS transporter [Medicago truncatula]
COG	YP_006180545.1	8.00E-60	MFS-type transporter [Halobacillus halophilus DSM 2266]
Swissprot	tr\|O04249\|STP7_ARATH	0	Sugar transport protein 7
trEMBL	tr\|A0A072TGU8\|A0A072TGU8_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:KEH16381.1}

Sequence

Transcript Sequence

>Glyur000127s00009195.1
ACCTTGTATAAATTTGAAGCATGAGAGTGATGAGGCTCATCCCTGAAAGCCAAAAAGTATCAACGTTTGCATAACCTCAACAGAAAGGAGAATTATTCAGGGAAATGGCAGGTGGNTCTTTTACTGCAGGTGGTGTGGCTAAGCCGAGGGCAGAGCAATACAAAGGGAAGGCCACAGTTTATGTCATCATCGCATGCATTGTTGCTGCCACTGGCGGGTCTCTCTTCGGCTATGATGTTGGGATTTCAGGAGGAGTTACTTCCAATGATGAGTTTCTTCAGGGTTTCTTCCCCTCAGTATACAAACAAAAAATGCACGCACAGGAAAACAACTACTGCAAGTATAACAGTCAGGGCCTTGCAGCATTTACCTCTGTTCTATACATTGCTGGTTTAGTTGCATCCCTGATGGCATCTCCGGTTACAAGGAAGTATGGACGTAGGATAAGTATCATAGGTGGTGGTATCAGCTTTTTCATTGGATCAGCTCTGAATGCCTCAGCTGTTAATCTGGCAATGCTTATCATAGGCCGCATTATGCTTGAGATGGCACCAACCCATCTTCGAGGAGGCCTGAACATGATGTTTCAAGTAGCAACTACTTTTGGGATTTTTACAGCAAATATGATCAATTTTGGAACACACAAGATTAAACCATGGGGGTGGAGGCTGTCTCTTGGCCTTGCTGCAATACCAGCTCTTTTGATGACTGTTGGGGGACTATTTCTTCCAGATACTCCAAATAGCTTAGTAGAACGAGGATCAAAGGAAAAAGGAAGGAAGCTCCTTGAAAAAATCCGGGGAACGAATGATGTTGATGCTGAGTTCCAAGATATGGTTGAAGCGAGCGAGTTGGCAAACTCAATAAAGCACCCCTTTAGGAACATCCTTGAGAAAAGAAACAGGCCTGAGTTGGTCATGGCAATCTTCATGCCTGCGTTCCAGATTCTGACTGGCATAAATTCAATTCTCTTTTATGCTCCAGTGCTATTTGAAAGCTTGGGATTTGGCAGAGACGCGTCTCTCTACTCCTCAGCCTTGACTGGTGGAGTTCTTGCCTTCTCAACATTCATTTCTATTGCAACAGTAGATAGATTGGGCAGGAGACCCCTACTCATCAGTGGTGGAATACAAATGGTTACTTGTCAGGTTATAGTTGCCATAATTTTGGGGATCAAGTTTGGAGAAAACCAAGAATTGTCGAAAGGCTATTCAATATTGGTTGTAGTTGTAATTTGCCTATTTGTTCTNGCTTTCGGATGGTCATGGGGCCCACTAGGCTGGACTGTTCCAAGTGAGATATTTCCATTAGAAATCCGATCAGCAGGGCAGAGTATCACAGTTGCTGTAAATCTTCTGTTCACTTTCATAATTGCCCAGGCCTTTCTTTCCCTTCTCTGTTCATTCAAGTTTGGGATCTTCCTGTTTTTTGCTGGCTGGATCACCATCATGACCATATTTGTTTTTTTGTTCCTACCTGAAACAAAGGGAATACCCATTGAAGAGATGACATTTATGTGGAGGACACATTGGTTCTGGAAAAGGATACTACCAGAGACAACTGATGATATAAAAGGGTAAGATGTTCCAAGGAGTCAAGTGATGCAGTTTGTTTGACTGCCCCAGGGCCCTGGTACTGAATTACTGAACTCAGACATGTTATCAAACTGCTCATGGTGCAGCATAGAACTGAGAATTTCATCCAGATCAATAAAGTTTACCCTTCGTATGCTATAATTGAGTAGACCACACAACTATAAAGCTAGTTGAACAGGACAATGTAAAATAGCCTTATGTATTTGTGGAAAATNAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00127	291803	295037	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000127s00009195.1	PF00083.19	Sugar_tr	31	472	3.60E-109

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.238
SRR1783600	control	8.334
SRR1783602	moderate drought stress	5.493
SRR1811619	moderate drought stress	5.701

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.692
DRR006520	Root Summer glycyrrhizin high producing strain	11.841
DRR006521	Root Winter glycyrrhizin high producing strain	12.177
DRR006522	Root Winter glycyrrhizin high producing strain	11.880
DRR006523	Root Summer glycyrrhizin low producing strain	4.284
DRR006524	Root Summer glycyrrhizin low producing strain	4.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.817
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.798

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.346
SRR2868004	Drought Stress (root)	1.483
SRR2967015	Control (root)	1.734

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.255
SRR9715740	Leaf	11.959
SRR9715741	Leaf	5.337
SRR9715739	Root	2.096
SRR9715742	Root	7.574
SRR9715743	Root	6.885

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.402
SRR8749028	MeJA induced 9h	1.088
SRR8749029	MeJA induced 9h	1.116
SRR8749030	Uninduced	0.958
SRR8749031	Uninduced	1.129
SRR8749032	Uninduced	1.004

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.398
SRR8400027	Control - Root	11.573