Gene detail information of Glyur000127s00009192 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09850.1 | 1.00E-100 | D111/G-patch domain-containing protein |
| NR | XP_003542623.1 | 0 | PREDICTED: uncharacterized protein LOC100802615 [Glycine max] |
| Swissprot | tr|Q9SHG6|STIP1_ARATH | 1.00E-08 | Septin and tuftelin-interacting protein 1 homolog 1 |
| trEMBL | tr|I1LZN2|I1LZN2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G22490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00127 | 277821 | 284590 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000127s00009192.1 | PF01424.17 | R3H | 450 | 503 | 8.50E-06 |
| Glyur000127s00009192.1 | PF01585.18 | G-patch | 653 | 696 | 2.10E-14 |
| Glyur000127s00009192.1 | PF01585.18 | G-patch | 758 | 802 | 9.50E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.456 |
| SRR1783600 | control | 8.430 |
| SRR1783602 | moderate drought stress | 13.940 |
| SRR1811619 | moderate drought stress | 13.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.723 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.528 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 68.122 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 66.185 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.301 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.322 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.097 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.663 |
| SRR2868004 | Drought Stress (root) | 36.804 |
| SRR2967015 | Control (root) | 43.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.343 |
| SRR9715740 | Leaf | 18.286 |
| SRR9715741 | Leaf | 20.706 |
| SRR9715739 | Root | 4.326 |
| SRR9715742 | Root | 15.236 |
| SRR9715743 | Root | 13.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.240 |
| SRR8749028 | MeJA induced 9h | 28.477 |
| SRR8749029 | MeJA induced 9h | 18.342 |
| SRR8749030 | Uninduced | 20.279 |
| SRR8749031 | Uninduced | 17.061 |
| SRR8749032 | Uninduced | 22.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.834 |
| SRR8400027 | Control - Root | 27.793 |