Gene detail

Gene detail information of Glyur000127s00009185.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11060.1	8.00E-113	KNOTTED1-like homeobox gene 4
NR	XP_007155117.1	0	hypothetical protein PHAVU_003G174900g [Phaseolus vulgaris]
Swissprot	tr\|P48001\|KNAT4_ARATH	5.00E-150	Homeobox protein knotted-1-like 4
trEMBL	tr\|V7CDZ8\|V7CDZ8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27111.1}

Sequence

Transcript Sequence

>Glyur000127s00009185.1
CATTCACCACAATATGTCTCCACGTTATCACCAAAGCCACCGTTAGATCTCTCTCTCCCACTTCTCGCTCTCCGCGTCAACCCATCCCAAAAGTCATTCCTTTAAAAAGTGTTTTTCCATGCCTCTTGCTCCTTCCTTCCTTTCACCAGACAGCAGCTAGCATCAATCAACATTCAACAACCACTCCCTTTTCTTTCCCCCTATCTTCTCTTCTAAACCTTGCTTGCTTTTAATTCTCCCATCACAAATCCATGTTTGATTTCCATCAGTGGAAACAAAACCATTAGTAAAATGTAGTGAGAGAGAGAGAGAGAGAGAGAGAATCGGTTAATCAATTAATGATATATAAGAGCGTATTAAAATGGCTTTCCAGCAGGGGCACCATCTCCACCACGAAATAGCATTCCAGCGATTCACGGAGGAGCAAGAGTTGAGCGAGAATAATAGAGAGATGCAGCAGCAGCAGCAGCAGAATTTCCTGCACTTGCAGCAACCGGAGAGGAGGGAGAAGAGCATGGAAGGGAACCGGAGCGAGAGCAGCAGGTACAACAACAACTTGAGGGAGTACAAAGCAGATATATTGGGGCACCCCCTTTACGACCAACTTTTATCGGCTCACGTTTCCTGCCTAAGGATTGCTACGCCCGTGGACCAGCTTCCCAGGATCGACGCTCAGCTTCAACAGTCACCGCGCGTCGTCGAAAAATACTCTCCCCTTGGAAATGGGGTCCTCGATCACAAGGACCTCGATCACTTTATGACGCATTATGTTCTGTTGCTGTGTGCCTTCAAAGAACAATTGCAACAACATGTCCGAGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGAACTCGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCAGGGGAAGGAACGGGAGCAACAATGTCAGATGATGAAGATGAGCAAGCAGAGAGCAACGGCAACAACTTATACGAAGGAAGCCTTGTGGATGGCGCTGATAGTCTTGGCTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGGTCTTTGATGGAGCGAGGTTACAAGGAGAAGATTGTAGACATAAGAGAAGAGATTCTACGAAAGAGACGAGCGGGGAAGCTCCCAGGGGACACCACCTCCCTTTTGAAAGCCTGGTGGCAGTCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACGGGGTTGCAATTAAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAAAGGAACTGGAATACTAATAACCCCTCATCCAGCTCTACTAACTCCAAAAGCAAGCGAAAGAGCAGTGCAGGCGACACCAGTAACCAGAGCTTCATGTGAATATAATATAATATAATCACATTTATATTTTGAGCAAAGAAAAGAAACCATTGTTAGCTTAGCTTCTTCACTTTATGCGGACGTGCTCGTGAGTGTGAGCGTGAAGCAATGGAATCTGGATATGCAGAAGGGGAATTTATAAAATCGCTGTTAAGAAAAGTACCCTTGTACGTAGTAGTGTTGTATATGAGCTAGGCTAGCTGCTGCTTGACGTCGGACATTGGTGTATGTAAGCACGATATATTGGATTAATGGGTAGCATGCATTGCTGATACGTATTTCACTATAAAAATGAAAAATAAATCTTCAAAAAGAAACATTGAACATATATAGTACAGATTTGTCGGTTTTATTTTAGCGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00127	260909	264802	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000127s00009185.1	PF03790.8	KNOX1	68	109	2.60E-17
Glyur000127s00009185.1	PF03791.8	KNOX2	123	174	3.80E-19
Glyur000127s00009185.1	PF05920.6	Homeobox_KN	262	301	2.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.139
SRR1783600	control	18.192
SRR1783602	moderate drought stress	17.759
SRR1811619	moderate drought stress	17.838

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.945
DRR006520	Root Summer glycyrrhizin high producing strain	45.492
DRR006521	Root Winter glycyrrhizin high producing strain	199.702
DRR006522	Root Winter glycyrrhizin high producing strain	195.852
DRR006523	Root Summer glycyrrhizin low producing strain	58.298
DRR006524	Root Summer glycyrrhizin low producing strain	57.964
DRR006525	Leaf Summer glycyrrhizin high producing strain	141.473
DRR006526	Leaf Summer glycyrrhizin high producing strain	138.877

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.803
SRR2868004	Drought Stress (root)	50.398
SRR2967015	Control (root)	72.281

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.943
SRR9715740	Leaf	96.807
SRR9715741	Leaf	70.134
SRR9715739	Root	10.675
SRR9715742	Root	28.822
SRR9715743	Root	22.331

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.618
SRR8749028	MeJA induced 9h	42.177
SRR8749029	MeJA induced 9h	38.952
SRR8749030	Uninduced	39.661
SRR8749031	Uninduced	38.350
SRR8749032	Uninduced	18.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.028
SRR8400027	Control - Root	30.528