Gene detail information of Glyur000127s00009179 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15580.2 | 9.00E-09 | RING/U-box superfamily protein |
| NR | XP_006600145.1 | 2.10E-30 | PREDICTED: uncharacterized protein LOC100500350 isoform X1 [Glycine max] |
| trEMBL | tr|I1MTZ5|I1MTZ5_SOYBN | 8.00E-31 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G11370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00127 | 237963 | 239039 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.754 |
| SRR1783600 | control | 3.515 |
| SRR1783602 | moderate drought stress | 2.423 |
| SRR1811619 | moderate drought stress | 2.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 79.701 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 77.812 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.136 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.070 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.811 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.947 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.821 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.037 |
| SRR2868004 | Drought Stress (root) | 15.142 |
| SRR2967015 | Control (root) | 15.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.849 |
| SRR9715740 | Leaf | 22.727 |
| SRR9715741 | Leaf | 14.122 |
| SRR9715739 | Root | 13.009 |
| SRR9715742 | Root | 10.626 |
| SRR9715743 | Root | 8.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.014 |
| SRR8749028 | MeJA induced 9h | 67.962 |
| SRR8749029 | MeJA induced 9h | 130.940 |
| SRR8749030 | Uninduced | 57.761 |
| SRR8749031 | Uninduced | 90.743 |
| SRR8749032 | Uninduced | 74.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.203 |
| SRR8400027 | Control - Root | 26.012 |