Gene detail

Gene detail information of Glyur000127s00009177.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45290.1	1.00E-36	RING/U-box superfamily protein
NR	XP_003549707.1	0	PREDICTED: uncharacterized protein DDB_G0271670-like [Glycine max]
Swissprot	tr\|Q8W571\|ATL32_ARATH	3.00E-14	RING-H2 finger protein ATL32 (Precursor)
trEMBL	tr\|I1MTZ7\|I1MTZ7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G11390.1}

Sequence

Transcript Sequence

>Glyur000127s00009177.1
AAAAAATGGGAAATAATTGAGAATGAAGAAATGAAGGAAAGGCTCAAAGTTGGTCAGCTTTCCATTGTCATCAAGCAATAAGCATTCACATCCACATCTAGCTAAGCTAGGCTACTTGTGTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCCTCTCATCTTCTCTTCTCTTCTCTTCTGAGTTGTTCTGAGAGTCTTTGCACCTTCTCTTCGACATCCACATGGGTTCGTCCTCTAGTCGACTCGGGTCTCCTCACCCTTCTACTCCCAGAAACAGGGACAGGGTCNGGGTAAGGGTCAACCCCCGCTTCAGACTCTCCTCTCTTCTCTGCGGCACCTCCACCTCTCGCTCTATTTCTCGGATGGAAGAACATCCATCTGAACCTCAGGTTGCTTCAGCAAGAGGTTTTGTTGATGGAATTCAGAAAGTCACCGAGGAATCGTCATTATCATGTACAGAAGCTAGAATTAGCTCTTGTCCTCATGCTGAGACTGCAACCTCATCTGATATGAGAACTGAGTTCTATGGGAATACTAGGGTTGAAGGTTCTTCCAGAAATGTTGCAACAAGTAGTCAGAGGAAATGCTTGTCTGAACGTAAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCCGGTCATGGTCGTCATGAATCATATAGTGATAGTAACAACACAGCTAGTACTTCATTAGTTGAACAGCAGTCTTCAGGTCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATATAGTCAATAATCTTGATGATCCAGTTGTTAGTGGTGTTTCTCAAATCTCTCTTGAGACAATGCATCTAAGGAGCTCTACCTCTCAAGAACATGGAAATTCCAGTTCTGGTGAAATTTCTGTTGAGAATCACACAAATCCTGTCTCTCAAGTTTCCAGTATACCAGCAACTTCTCAAGTGCCAGAACCTGAACCTCATCACGAGAGAACTCCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGGCAGGGAAACGACAGTGTGCTTCAAGTTGATGTGGTTGCAATATCTTCCAACATTTTGTCTGGCAGCAATGCAGATGCCTATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCCACCGGAGGTGCTGATGATCCAGGATCTCAAGATCGATGGCTTGTTGATTTTGGTGGGGATTTATCAAATGATGGGGTTGGGGGTGCTTCTGGCGGTAGAATTCACAGATTGAATGAACGAATGCGACACTCTAGATCTGAGATCTGGGAAAGGCTTCGTGGCGGCCTTGATGAAATTGGTCGCTTGAATACTTCATGTCCATTAGGACTCCATGCAGATGGTATGTGCTCGTGTGAGTCTTTCCCAATGGCTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTCTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCCCTTTCCCTGTCCATGGTCTCACTCCCTGCACCGGAATCAGTCGTGGACTCTTTCCCTCTAAAGTCTCACAAAAAGGTTGATACAACTGATGGAGGCAGTGATGCTGAACAATGTTACATATGCCTGGCGGAGTATGAAGAAGGGGATCAAATACGAGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGTGTTGATAAGTGGCTTAAGGAAATACACGGTGTATGTCCTCTGTGTCGTGGCAATGTTTGTGGAGGGTTGACAGAGTCTTCTGCCCGCTCAGAAGTGCAGTCCCATTGATATTGTATATATGAATGTAAATATCAAATTCTAGACTAAACTACCATTCGGGGTCCTCTACAGATACACTTAACATCAAAATGGGTCCTCCAAAAATGTGTCATCAAAATGGTTCAAATTGATATCACAACTTGATGATGGATCATTTTGATTTCACTTTATAATCTTTGAAAGACTAATTTGATATCACAAATCTTGAAAGATTAAATTGATGCAAAGTGTATTTTGAATAACCAAAAGTGATATTAGCCTAAAATCCATTTGACCCTTGGCAATGATATGTGCAAAACAGCAATTAGAGTCCGATATACTTACGTTTCCCTTATTCCACCCCAATATTGGGAGAAATGAAAATTGGGTCTTTGACAGAAAAGATGGAACTTGTTTCTACTGTTCCCCCTCTTTTAAATATCTCTATTTTTATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00127	229861	233758	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000127s00009177.1	PF13639.1	zf-RING_2	471	514	3.50E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.530
SRR1783600	control	21.636
SRR1783602	moderate drought stress	18.550
SRR1811619	moderate drought stress	18.559

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.710
DRR006520	Root Summer glycyrrhizin high producing strain	9.724
DRR006521	Root Winter glycyrrhizin high producing strain	55.441
DRR006522	Root Winter glycyrrhizin high producing strain	53.920
DRR006523	Root Summer glycyrrhizin low producing strain	10.562
DRR006524	Root Summer glycyrrhizin low producing strain	10.244
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.028
SRR2868004	Drought Stress (root)	42.883
SRR2967015	Control (root)	42.790

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.410
SRR9715740	Leaf	34.133
SRR9715741	Leaf	30.873
SRR9715739	Root	13.630
SRR9715742	Root	16.674
SRR9715743	Root	15.635

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.030
SRR8749028	MeJA induced 9h	28.957
SRR8749029	MeJA induced 9h	21.612
SRR8749030	Uninduced	12.225
SRR8749031	Uninduced	9.426
SRR8749032	Uninduced	10.248

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.751
SRR8400027	Control - Root	25.975