Gene detail

Gene detail information of Glyur000127s00009172

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25620.1	4.00E-100	DNA-binding protein phosphatase 1
NR	XP_004508403.1	0	PREDICTED: probable protein phosphatase 2C 27-like [Cicer arietinum]
COG	YP_003709340.1	3.00E-22	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q69QZ0\|P2C27_ORYSJ	2.00E-172	Probable protein phosphatase 2C 27
trEMBL	tr\|G7JHS4\|G7JHS4_MEDTR	0	Phosphatase 2C family protein {ECO:0000313\|EMBL:AES91703.1}

Sequence

Transcript Sequence

>Glyur000127s00009172.1
AAACTCCATCATTTTCCCAACATATTCTAAGAATCTTCTCTTTCTCTCTTTTATTATAAGCTACAAAATTTCACCAAAAAGTCTCTCTTATATGTGTTGTGTGTGTTTGTGTGACTTTTTATATATTAGTTTCTGATTTCCATGCCTGGAAACTGCTAGGTGCTANGCTGAACGTACCACTTGCCCCACTACTGTGTTATCAACATGTGTGTGCAGGACGGTGACCAAGTTGCTCGAGATATGGAGAAACTTGATAACAGAAGAGCGTCATGGCCTTTGCATTGTGGTCTCTTGCATGCCCAGGTGGACAACAGGGAAAAAGACTCTTCCTTTACAACCCCCAGAGACCAGATCAGTGCTGCAAATTCATTTCCTCTGGAAAGCATATGTGAGGATGCAGAGATTGCAGAGAAAAAACAGAACCTGGTAAATTTTGTCCCTACTCTTCGATCTGGAGAGTGGTCTGATATAGGAGGACGCTCTTACATGGAGGATACCCACATATGCATTGGAGACTTGGCAAAGAAATTTGGCTATGATGTGGTCTGCGAGGAAGCTGTTTCCTTTTATGGGGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTCCGCGATCATCTGCCGAGGGTGATTGTTGAGGATGCTGACTTCCCTCTGGAACTTGAGAAGGTGGTCACAAGATCATTTTTGGAGACTGATGCCGAGTTTGCAAAAACATGCTCTACTGAGTCTTCCCTGTCTTCTGGTACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTGGCCAATGCTGGNGACTGCAGGGCTGTTTTGTCCCGCGGTGGAGGGGCTATAGAAATGTCCAAAGATCACAGACCCTTGTGCATCAAGGAAAGGATGCGGATCGAGTCCCTGGGTGGATTCGTCGATGATGGTTACCTGAATGGACAGTTAGGTGTCACTCGTGCTCTAGGTGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGGAAGAGGTGGACCATTGAGTGCTGAGCCTGAACTCAAATTGATGACATTGACCAAAGAAGATGAGTTCTTGATAATTGGCAGTGATGGAATATGGGATGTTTTCCGTAGCCAAAATGCTGTGGATTTTGCTCGGAGGAGGCTTCAAGAGCATAATGATGTGAAGCAATGTTGCAAGGAAATAATAGGGGAAGCAATAAAGAGAGGAGCAACAGACAACTTGACAATTGTGATGGTATGTTTTCACTCAGATCCACCACCCTCTTTGGTTGTAGAAAGGCCTAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATACTTGCTAGAAGGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00127	215199	217513	+

Gene family

Gene family	subfamily
Transcription Factors Family	DBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000127s00009172.1	PF00481.16	PP2C	91	339	5.20E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.501
SRR1783600	control	2.495
SRR1783602	moderate drought stress	4.262
SRR1811619	moderate drought stress	4.265

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.664
DRR006520	Root Summer glycyrrhizin high producing strain	1.513
DRR006521	Root Winter glycyrrhizin high producing strain	0.387
DRR006522	Root Winter glycyrrhizin high producing strain	0.323
DRR006523	Root Summer glycyrrhizin low producing strain	0.572
DRR006524	Root Summer glycyrrhizin low producing strain	0.574
DRR006525	Leaf Summer glycyrrhizin high producing strain	79.734
DRR006526	Leaf Summer glycyrrhizin high producing strain	81.161

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.387
SRR2868004	Drought Stress (root)	6.478
SRR2967015	Control (root)	8.727

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.351
SRR9715740	Leaf	32.864
SRR9715741	Leaf	18.345
SRR9715739	Root	2.252
SRR9715742	Root	1.881
SRR9715743	Root	1.734

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.274
SRR8749028	MeJA induced 9h	4.047
SRR8749029	MeJA induced 9h	2.001
SRR8749030	Uninduced	2.488
SRR8749031	Uninduced	0.860
SRR8749032	Uninduced	0.682

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.484
SRR8400027	Control - Root	13.188