Gene detail

Gene detail information of Glyur000127s00009171

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23740.1	7.00E-72	ribosomal protein S11-beta
NR	XP_008800685.1	1.04E-101	PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
COG	YP_002428859.1	1.00E-29	30S ribosomal protein S17P [Desulfurococcus kamchatkensis 1221n]
Swissprot	tr\|P17093\|RS11_SOYBN	9.00E-96	40S ribosomal protein S11
trEMBL	tr\|V7CCT3\|V7CCT3_PHAVU	1.00E-95	Uncharacterized protein {ECO:0000313\|EMBL:ESW27100.1}

Sequence

Transcript Sequence

>Glyur000127s00009171.1
TCGAAGAAATCTGGGAAGGGAAAGAGACCTGGAAAAGGCGGAAATCGCTTTTGGAAATCCATTGGGCTCGGTTTTAAGACTCCCAGGGATTCTATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCGCCGGCAATGTTTCCATCCGTGGCCGTATCTTAGCTGGAACTTGTCACAGTGCTAAGATGAATATGACTATTATTGTTAGGAGGAACTATCTTCACTTTATTAAGAAATACGAGAAGCGGCATTCTAATATTGCCGCTCATATATCACCTTGCTTCCGTGTGAAGGAAGGAGATCACGTCATTATTGGCCAATGCAGGCCACTCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCAGNTGGATCTTCTAGTGGTGCGAAGAAGGCATTTACTGGAATCTTTCAGTTCTTGCTGATGCTACTCGGGTGTCTTACCCTAGGGTCCCTTGGTGGAGTGGGTCAGTGTGCGGCTACCGCCTACCACATTCCCATCGCCGTCCTCTGCAAAACTCCGTTCAATATGGCTGAACAAACCGAGAAAGCTTTTCTGAAGCAACCTAAAGTGTTTCTAAGCTCAAAGAAGTCTGGGAAGGGGAAGAGGCCTGGAAAAGGTGGAAATCGCTTTTGGAAGTCCATTGGGCTCGGATTTAAGACTCCCAGGGACGCAATCGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTAGCCGGAACTTGTCACAGTGCTAAGATGAATAGGACTATTATTGTTAGGAGGAACTATCTTCACTTTATTAAGAAGTATCAGAGATACGAGAAGAGGCATGCAAATATTGCCTCGCATCTATCACCCTGTTTCCGTGTGAAGGAAGGAGATCACGTGATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCAGCTGGATCTTCTAGTGGTGCGAAGAAGGCTTTTACTGGAATCTGAGATTTTATTGAGTTTTTATTGAAGGACAATGTTGCCTTGTTAGTTACTAGTTTGTAATTCTGATTTATGTAAAGTGACAAATATAAAGATCGTATCAATTTTGGATTGCTTTTGAGGTTTTGTTCTGTGATTTGATAAATTTTAAAAGGATTTTGATTTTCTTATCCCGCACAAATGCACAATCATTATTACAAACACTTACCTTTTAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00127	201167	207528	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000127s00009171.1	PF00366.15	Ribosomal_S17	56	122	2.20E-23
Glyur000127s00009171.1	PF00366.15	Ribosomal_S17	252	321	8.70E-28
Glyur000127s00009171.2	PF00366.15	Ribosomal_S17	87	156	2.40E-28
Glyur000127s00009171.3	PF00366.15	Ribosomal_S17	56	122	3.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.737
SRR1783600	control	30.865
SRR1783602	moderate drought stress	21.709
SRR1811619	moderate drought stress	21.635

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	99.732
DRR006520	Root Summer glycyrrhizin high producing strain	101.158
DRR006521	Root Winter glycyrrhizin high producing strain	102.565
DRR006522	Root Winter glycyrrhizin high producing strain	98.739
DRR006523	Root Summer glycyrrhizin low producing strain	74.990
DRR006524	Root Summer glycyrrhizin low producing strain	76.997
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.018
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.060

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	148.851
SRR2868004	Drought Stress (root)	95.445
SRR2967015	Control (root)	93.276

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.721
SRR9715740	Leaf	59.338
SRR9715741	Leaf	51.534
SRR9715739	Root	61.096
SRR9715742	Root	57.794
SRR9715743	Root	59.054

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	116.262
SRR8749028	MeJA induced 9h	51.569
SRR8749029	MeJA induced 9h	97.456
SRR8749030	Uninduced	21.953
SRR8749031	Uninduced	12.846
SRR8749032	Uninduced	25.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	130.278
SRR8400027	Control - Root	117.470