Gene detail

Gene detail information of Glyur000127s00009168

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47910.1	3.00E-79	chlororespiratory reduction 6
NR	XP_004508406.1	4.98E-144	PREDICTED: uncharacterized protein LOC101508703 [Cicer arietinum]
COG	YP_007119824.1	7.00E-49	hypothetical protein Mic7113_0500 [Microcoleus sp. PCC 7113]
trEMBL	tr\|G7JGN3\|G7JGN3_MEDTR	5.00E-142	Chlororespiratory reduction protein {ECO:0000313\|EMBL:AES91693.1}

Sequence

Transcript Sequence

>Glyur000127s00009168.1
AAAAACATAAGGCGTGAGTAACTTGTAGATAAAATAAAGAAGAAACTGTATTAACCGCTTNTGTTGGCAAGCGCTCCCAGTCCCATATGCTACTGCTGAGAGTTGAGACTTTGGAAGTGCAAACTAATTAATGGCTACCACCACCAAATTCAAACCGTTTCTTCCACTTCCACTTTCTCCTTCGCCAAAACAAACCACTTCCCCTCNAACTTCATGCCTTAGGCTTTCCTACAAACCCATTTCCGACCCTTTGTCTTCCCTTGGTGTGTATCATCAGCGTGGAAATGTTGCAGTCTCCGTTGCCTTCAACCCCCAAGGCAACTTCGACCTCTCTTTATTTGATGACGACGATGACACTAAAGCTGCACCTCCTATGCCCCCAGCTGAAGGCCGATTTGATGTTGTTATTGACAATGATGTTATTTCTCGTCTTGACTTGTCCCCTTTTCAAGCTGCAACTGGCNTGAAAAACCCCTTATCTGTAAAACCACAAGAGTTTCTTGAGCGCACAATTGGCTTTACCATCAACTATACCAGAGAAGACCCTCGTGATCCTCGAGAGNTATCAGAGTTTCCAGATATTAGGCTATGGTTTGTGAGGCTTGATGCTGTTTATCCATGGTTGCCAGTCTTGTTGGATTGGAGAGCTGGAGAACTTGCTCGGTATGCTGCTATGTTGGTTCCACATCAGATGAATATGAAAATGGGAGTTGTTTTCAATCCGGAGGCATTGGAACTGTTTGTTATGAAGAAAGTCTTTGTTGTGTATTCCTGGTTGAAGCATCACAACATTCCCAAGCCTAAATTGAAGGCAAATGATATGGCCAGAATGCTTGGATTTGGAATTGGAGATGAACTATATGACTTAGTTGAGAACCATCCGCTTGATCTATCATAAAANGGCACCTATAAAGAGTAACCACCCTTAAGTATAAGAAACTTGTTTTTCGTTGATCCAATGTATGATGAAGTGTATCAGCATGTTAAGAGNAACTAGACTGGTAAAGGAGCAAGCAATGAGTTTAGCAGAACATAAGAGGGTCATNAAGAATTGAGCTAATAATCGAGTTTTTGAAACTTAATGAAATTAATTAATACCAGGCTAAGGGGTTTGTTTATTGCTGACTCTTCCCTAGAGTTTCATATTCTGTATTCACAACTCCCTACTCTAAGCAATGTACATTTATTGGTATTCCTGTTTCTACAGTACAGTTATTTTCATTCAATTCGTGCACGAACATAGTAACTTTGGAAGTGAAAACAAAGAGAGGAAAATGTTCAAGTACTCACCCCTTTAGATGTGTGCATCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00127	169069	170999	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000127s00009168.1	PF08847.6	DUF1817	93	246	1.40E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.444
SRR1783600	control	0.365
SRR1783602	moderate drought stress	0.232
SRR1811619	moderate drought stress	0.232

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.413
DRR006520	Root Summer glycyrrhizin high producing strain	0.409
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.133
DRR006524	Root Summer glycyrrhizin low producing strain	0.168
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.958
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.032
SRR2868004	Drought Stress (root)	0.131
SRR2967015	Control (root)	0.039

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.042
SRR9715740	Leaf	43.712
SRR9715741	Leaf	8.848
SRR9715739	Root	0.227
SRR9715742	Root	0.000
SRR9715743	Root	0.187

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.596
SRR8749028	MeJA induced 9h	0.051
SRR8749029	MeJA induced 9h	0.279
SRR8749030	Uninduced	0.048
SRR8749031	Uninduced	0.114
SRR8749032	Uninduced	0.163

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.551
SRR8400027	Control - Root	0.326