Gene detail information of Glyur000127s00009157 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32060.1 | 2.00E-140 | calcium-binding EF hand family protein |
| NR | XP_004508411.1 | 0 | PREDICTED: calcium uptake protein 1 homolog, mitochondrial-like [Cicer arietinum] |
| trEMBL | tr|K7M068|K7M068_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G23280.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00127 | 115597 | 119327 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000127s00009157.1 | PF13833.1 | EF-hand_8 | 194 | 216 | 0.0015 |
| Glyur000127s00009157.1 | PF13499.1 | EF-hand_7 | 228 | 330 | 1.10E-07 |
| Glyur000127s00009157.1 | PF13833.1 | EF-hand_8 | 392 | 443 | 5.10E-10 |
| Glyur000127s00009157.2 | PF13405.1 | EF-hand_6 | 193 | 221 | 0.0078 |
| Glyur000127s00009157.2 | PF13833.1 | EF-hand_8 | 364 | 415 | 4.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.104 |
| SRR1783600 | control | 0.140 |
| SRR1783602 | moderate drought stress | 0.153 |
| SRR1811619 | moderate drought stress | 0.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.248 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.264 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.255 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.274 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.236 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.041 |
| SRR2868004 | Drought Stress (root) | 1.827 |
| SRR2967015 | Control (root) | 2.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.636 |
| SRR9715740 | Leaf | 29.164 |
| SRR9715741 | Leaf | 31.922 |
| SRR9715739 | Root | 0.028 |
| SRR9715742 | Root | 0.189 |
| SRR9715743 | Root | 0.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.293 |
| SRR8749028 | MeJA induced 9h | 6.214 |
| SRR8749029 | MeJA induced 9h | 3.079 |
| SRR8749030 | Uninduced | 4.114 |
| SRR8749031 | Uninduced | 3.930 |
| SRR8749032 | Uninduced | 1.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.647 |
| SRR8400027 | Control - Root | 2.092 |