Gene detail

Gene detail information of Glyur000127s00009149

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20360.1	3.00E-152	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
NR	XP_003541489.1	0	PREDICTED: uncharacterized protein LOC100807387 [Glycine max]
COG	YP_007098828.1	9.00E-06	tetratricopeptide repeat protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q84JR9\|TTL4_ARATH	8.00E-12	TPR repeat-containing thioredoxin TTL4
trEMBL	tr\|I1LZU9\|I1LZU9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G23250.1}

Sequence

Transcript Sequence

>Glyur000127s00009149.1
GTAAAAAATAAAATAAAGGAAAGAATATTGCAATGCTGGATTTCAGATTCTGAGCTGAGATATCAAGCAAGCTTACGTTATCTGGTTTTCGTGCTCCGCTTTTGTGGCGTTAGCGTCAAGGCTGTGAAAAAAGAAAAGAAAAACCATTCTTCATTCTTGTACATTACAAAAGCAAGGACGGCACAACCACAACAACAAACACCACTTGTCTTCCTTCCGTTTCTCACATTTCCATCTTCCTTACTGTGTTGTCGTCTTTGGACTTCCCTTTCAAAGTTCGAAGCTTTTTCGTTTTCATTTCTCATAATTTGTCACCCAGATAAGTTTCTCTCTCTTGCCAAATTCCCCCTTTTTTTTTGCAGTTTTCTTCTTTCACCTTAGAATCCCAGTTGGGGTTGTTGAAGCCCCTTCTCAAAGTTGGGATTTTATTTTGTATTAGCAGAATCAAATCCTAATTTGGAGAGAAGGAAAGTACGTTTGTGTTCACTGTTCTCAGGCCATTATGGTAAGAGAACAGTAGCACAACTNTGAGATTTTGAGCCTGTTTCATAATAGCTGCTGCTGGAGCTGCCACTGGAAATCAAATATTGTTGTATCTTATTCGTAATTTCCTTGGCTTTTAGATACTGCCAAGTTGATTATATCTGAAGTTCTTTCCTTTTAACTTGTCTTTTTTCCATTTTCTTTGGAAGGCCTTGTAATTGATTATCTTGTGTGTACCTGATTTATTAAAGTAAAAAAGGTATCTTTCATTCTTACTGACTTGAGTCTTGACTCACTGGATTGAACTTTGAGTGTTGCTGTATAAGAGAAGTGTTGCTTGGGTTGGTTTCTCTACAGTTGGATTNTTGGGGTTCAAAATGGGGAAGAAAAAGAAGCAAGTGGGAGAGACAAATGAAGATGGTGGAGTTCAGAGCAAAGTGGGAAATAGCAGCCCCAGAACATATGACAGTGATACTATGGTGTTTATAGCCATGGCTCAGGAGTTGAAGGATGAAGGGAACAAGCTGTTCCAAAAGAGGGACCTTGAAGGAGCGATACTGAAATATGAGAAAGCCCTCAAATTGCTTCCAAGAAATCACATTGATGTGTCCTATCTGCGGAGTAACATGGCTGCTTGTTACATGCAGATGGGACTCAGTGAGTATCCAAGGGCAATTCATGAATGCAATTTGGCCCTTGAAGTAATGCCGAAATATAGCAAAGCGCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTGAATAGGCTGGATTTAGCTCTGAGAGATGTTAGTACTGTTGTGAAGATGGAGCCAAATAATGTGATGGCATTGGAGATCTCAGAAAAGGTGAAAAATGCGCTCGAGGAGAAAGGATTGAGAGTGAATGATACAATAATTGAGTTACCTCCTGATTATGTTGAACCTCCTAATACTTTGCCTCCAGAAAAGGTANTGAAAGAGAAGACGCGCAAGAAGAAGGGCAATAAAGAGGAGGAGAAGCCTNCTGATAGCAAAGTTCCAGAAAAACAGGCCGAGGAGAAATTTGAAGAGATGAAAGCTGAGGACGGTAATGTAATAGTAGAGAAGAAGGCCAGCACATCCAAAAAGAAGAAGGCCAAGGAGAAAAATGATGANAAGAAAGCTGATATTAAGGAAGTTGTAGAGGAGCAAAGTAATGGTAGAAGGGAAGATGTACCTAAAAAAACAGCAAAACTTATTTTTGGCGAGGATATAAGATGCACTGAATTACCTGTTAATTGTAGCCTCTTGCAGTTAAGAGAAGTTATTCGCGACCGATTCCCAAGCCTAGGAGCCGTTCTTGTCAAATACAAAGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGATGAATTGAGATGGGCTGAAACAGGATCTCATGGTTCTATCCGGCTGTACATAGTAGAAGCTAGTCCTCAGCACGATCCATTCTTCGAGAAACATAAAGTAAAGGAGGGGGAAATGGTTGGCATTAACGGTGCACTTGAGAATGGTTGTGTGGGAAAAACAAGGGAAATAATTAGCTCATCTTGCATTGAGGATTGGATAATTCACTTTGCCAAACTGTTCAAGGACCATGTTGGGTTTGAATCTGACAGATATTTAGACTTTCATGAACTGGGGATGAAGCTCTATTCTGAGGCTTTAGAGGAGACAGTTACAGGTGAAGAAGCGCAAGGCCTATTTGACATGGCAGGAGATAAGTTTCAAGAGATGGCTGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAAAAAGTATATTCCACAGAAGATTCTTCTAAGGAGCATCTATGTGAACAAATCAAAAGTTCATATGAATGGGCACAGAAAGAATATGCAAAAGCAGGAGAAAAATATGAAGCAGCCATCAAAATCAAGTCAGATTTTTATGAAGGCTTNTTGGCACTAGGGCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCACTCAGTAGTAATGTAGATTTAGTAACATGGCCTTCCACTGAGGTTCTTCAGCTGTACAACAAAGCTGAGGATAATATGGAGAAAGGAATGCAGATATGGGAAAAATCAAAAGAGCAACACTTGAGTAAAACCTCTAACTCAATGGATGTTAGATTACATTTGCAGAACATGGGGTTGGATGGGATTTTTGAAAATATATCCTCAGATGAAATTGCTGCACAGGAGGAAAATATGAAGTCTCAAATAAATCTCCAATGGGGTTCCATGCTGTATGAACGCTCAATTACAGAATTCAAACTAGGGATACCAATATGGCATGAATCTCTGGAAGTTGCAGTTGAGAAGTTTGNACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGCTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTAGCATTCGAGATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTNGCAGAGTGGAGTTCCATCATTCCGTTTGGAACCCTTATTTAGAAGGAGAGTTTCAAAAATTTATCATGCCCTTTGAGCTTGCANGAATTGCATCTTTTTCTTCAAGTANTTGAAGAATAACAGCNGCAAGCCAGCAACAGTCACTTAGGCTGCTTCTGTGCCAGAAATGCTATTGTCATCAGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00127	80525	83755	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000127s00009149.1	PF13414.1	TPR_11	40	111	5.20E-17
Glyur000127s00009149.1	PF00564.19	PB1	276	349	2.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.719
SRR1783600	control	2.650
SRR1783602	moderate drought stress	2.901
SRR1811619	moderate drought stress	2.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.171
DRR006520	Root Summer glycyrrhizin high producing strain	3.200
DRR006521	Root Winter glycyrrhizin high producing strain	1.132
DRR006522	Root Winter glycyrrhizin high producing strain	1.138
DRR006523	Root Summer glycyrrhizin low producing strain	3.122
DRR006524	Root Summer glycyrrhizin low producing strain	3.041
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.105
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.146

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.037
SRR2868004	Drought Stress (root)	11.670
SRR2967015	Control (root)	10.286

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.801
SRR9715740	Leaf	18.252
SRR9715741	Leaf	14.512
SRR9715739	Root	0.552
SRR9715742	Root	3.724
SRR9715743	Root	3.231

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.650
SRR8749028	MeJA induced 9h	4.536
SRR8749029	MeJA induced 9h	2.073
SRR8749030	Uninduced	2.221
SRR8749031	Uninduced	4.709
SRR8749032	Uninduced	1.279

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.840
SRR8400027	Control - Root	8.207