Gene detail information of Glyur000127s00009148 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15740.1 | 4.00E-173 | Leucine-rich repeat family protein |
| NR | XP_004508414.1 | 0 | PREDICTED: F-box/LRR-repeat protein 14-like isoform X1 [Cicer arietinum] |
| COG | YP_008925.1 | 3.00E-55 | hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25] |
| trEMBL | tr|G7JGL8|G7JGL8_MEDTR | 0 | F-box/LRR-like protein {ECO:0000313|EMBL:AES91678.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00127 | 69333 | 78544 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000127s00009148.1 | PF13516.1 | LRR_6 | 155 | 178 | 1.8 |
| Glyur000127s00009148.1 | PF13516.1 | LRR_6 | 229 | 252 | 0.63 |
| Glyur000127s00009148.1 | PF13855.1 | LRR_8 | 275 | 332 | 1.00E-08 |
| Glyur000127s00009148.1 | PF12799.2 | LRR_4 | 346 | 383 | 1.60E-07 |
| Glyur000127s00009148.1 | PF13516.1 | LRR_6 | 417 | 439 | 0.031 |
| Glyur000127s00009148.1 | PF13516.1 | LRR_6 | 441 | 462 | 1.5 |
| Glyur000127s00009148.1 | PF13516.1 | LRR_6 | 539 | 559 | 0.84 |
| Glyur000127s00009148.2 | PF13516.1 | LRR_6 | 155 | 178 | 1.7 |
| Glyur000127s00009148.2 | PF13516.1 | LRR_6 | 229 | 252 | 0.61 |
| Glyur000127s00009148.2 | PF13855.1 | LRR_8 | 256 | 313 | 7.10E-09 |
| Glyur000127s00009148.2 | PF12799.2 | LRR_4 | 327 | 364 | 1.50E-07 |
| Glyur000127s00009148.2 | PF13516.1 | LRR_6 | 398 | 420 | 0.03 |
| Glyur000127s00009148.2 | PF13516.1 | LRR_6 | 422 | 443 | 1.4 |
| Glyur000127s00009148.2 | PF13516.1 | LRR_6 | 520 | 540 | 0.8 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.659 |
| SRR1783600 | control | 19.786 |
| SRR1783602 | moderate drought stress | 40.716 |
| SRR1811619 | moderate drought stress | 40.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.964 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.168 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 93.869 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 91.592 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 56.388 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 56.036 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.865 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.515 |
| SRR2868004 | Drought Stress (root) | 65.206 |
| SRR2967015 | Control (root) | 110.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.122 |
| SRR9715740 | Leaf | 25.640 |
| SRR9715741 | Leaf | 34.489 |
| SRR9715739 | Root | 15.377 |
| SRR9715742 | Root | 30.895 |
| SRR9715743 | Root | 27.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 66.520 |
| SRR8749028 | MeJA induced 9h | 214.425 |
| SRR8749029 | MeJA induced 9h | 106.037 |
| SRR8749030 | Uninduced | 94.661 |
| SRR8749031 | Uninduced | 53.219 |
| SRR8749032 | Uninduced | 77.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 65.336 |
| SRR8400027 | Control - Root | 60.705 |