Gene detail

Gene detail information of Glyur000127s00009136.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G34930.1	0	arogenate dehydrogenase
NR	XP_004508423.1	0	PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Cicer arietinum]
COG	YP_005063728.1	1.00E-39	prephenate dehydrogenase [Sphaerochaeta pleomorpha str. Grapes]
Swissprot	tr\|Q944B6\|TYRA1_ARATH	0	Arogenate dehydrogenase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A072UR36\|A0A072UR36_MEDTR	0	Prephenate dehydrogenase {ECO:0000313\|EMBL:KEH32147.1}

Sequence

Transcript Sequence

>Glyur000127s00009136.1
CATCATCCTTCTTTGCGGCCACCATCTTAAACAAACAGAAACAACCGCTTCACATTTTTCCTCTCACATTTTTACTTCTTGGTCCCTAAATAAACCCCACGCCGTCACCATGCTCGGCGTGTCCACCTTTCATTCAAGGCCGTTAAACCCACCGTCACCGTCACCGTCACCGTCACCGTCACCGTCACCGTCACTGTCACCGTCACATTCCACCATCACGCGTTTGAAGCCTCCTTTCTCATTCCCCTCCTCCTTCTCATCTTCCCCCTGCCACCGGAACCGCGCCTCCAAGAGAACCGTCACGGTTCGCGCNATCGACGCAGCACAGCTCTTCGACTACGAATCCAAAGTAGCCCTCGAGTTCCACAATGCCCAGAAGCTCAAGATCGCCATCNTCGGTTTCGGCAACTTCGGTCAGTTCCTCGCCAAAACCCTCGTTCGCCAGGGTCACACCGTCCTCGCCCATTCCCGCTCCGACTACACCGACGCCGCACGGCGACTCGGCGTCACGTTTTTCCCCAACGCCGACGACCTCTGCGAGGAACACCCCGAAGTGATCCTCCTCTGTTCCTCAATAATCTCCACCGAACAAGTCCTCCTCTCTCTCCCCNTTCAGCGCCTCAAGCGCAGTACATTGTTCGTCGACGTTCTCTCCGTCAAGGAGTTCCCGAAAAACCTTCTTCTCCGCGTTTTACCCACCGATTTCGACATCGTTTGTTCTCACCCCATGTTTGGGCCCGAGAGTGGAAGCAGAGGATGGAGTGGGCTTCCATTCGTGTTCGAGAAGGTTCGAATTGGGAACGAGGAACATAGGCTTTTGAGGTGTGAGAAGCTTCTAGATGTGTTTGGGAGGGAAGGGTGTAGGATGGTGGAGATGAGTTGTGAGGATCATGATATGTATGCGGCGGGGTCACAGTTCATAACGCACACTGTTGGGAGGGTTTTGGATACGTTGATGTTGGAGTGGACTCCTATTAACACCAAGGGGTATGAGTCATTGTTGAATCTGGTGGAGAACACTGCTGGGGATAGCTTTGATCTCTACTATGGACTCTTTATGTTCAATAAGAATTCGTTGGAGATGTTGGAGAGGTTGGATTTCGCGTTTGAGGACTTGAGGAAACAGCTTNTTGGGCGTTTGCATCATGTTGTCAGGAATCAGCTGTTTGAGAATGCTGGAAACCTGCAAATTTTACAAGATAACAATAATGCAGTGCCCCAAAATGGATCTGCACTTGTTCTAACCTCCAATAATCAGAGGCCAAACGATTCCGGCCAGTCTGATGACAACTCGAAGCTCAAGATTGCGATCATTGGTTTCGGCAACTTTGGTCAGTTCCTTGCGAAAACTATTGTACGTCATGGGCATAAAGTGTTAGCATACTCTAGATCGGACTACTCTCGTGTGGCTCAGGAATTGGGAGTTTCGTATTTCAGTGACGNGGATGATCTTTGTGAACAGCATCCGGAAGTGATTTTGCTTTGCACTTCGATCCTTTCCACGGAGAAAGTTCTTAAATCGTTGCCTGTGCAGAGGTTGAAGAGAAGTACTTTGTTTGTTGACGTGCTTTCCGTCAAAGAATTTCCTAGGAACTTGTTTCTTCAACATTTGCCACCGTATTTTGATGTTCTCTGTACTCACCCTATGTTTGGGCCAGAGAGTGGAAAAAATGGGTGGAAGGGTCTTCCTTTTGTTTTTGATAAAGTGAGAATAGGAAGAGAGGAATCAAGAATATCACGGTGTGATCGGTTTCTTGACATATTTTCCACAGAAGGGTGCCAAATGGTTGAAATGTCATGCGCTGAACATGATTGGCATGCAGCTGGATCACAGTTTATCACGCACACCACAGGAAGATTTTTAGAAAAATTGAAGTTGGAGGCAACACCAATTGACACAAAGGGCTATGAGACTTTATTGAGTTTGGTGGAGAATACTGCTGGAGATAGTTTTGATCTGTACTATGGTTTGTTCTTATATAATATAAATGCCATGGAGCAACTGCAAAGATTTGATATGGCTTTTGAGTCATTGAAGAAGNAGCTTTTTGACCGTTTGCATGGTATCTATCGAAAGCAAGTATTTAAATATGAAGAAAAGTTCTGTGATTTGCCAGAGAGGTCTATGTTGCCTGAGCTATCTGAAGATAATAATGTGGTAACTGTGGACACTAAATAAAATGTATTTCCAAGATTTCCATCTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00127	17257	19843	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15227	TYRAAT	EC:1.3.1.78	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0006571 tyrosine biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004665 prephenate dehydrogenase (NADP+) activity

GO:0008977 prephenate dehydrogenase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000127s00009136.1	PF02153.12	PDH	106	328	2.40E-14
Glyur000127s00009136.1	PF02153.12	PDH	412	587	1.90E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.543
SRR1783600	control	16.612
SRR1783602	moderate drought stress	19.009
SRR1811619	moderate drought stress	18.313

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.021
DRR006520	Root Summer glycyrrhizin high producing strain	12.942
DRR006521	Root Winter glycyrrhizin high producing strain	8.379
DRR006522	Root Winter glycyrrhizin high producing strain	8.021
DRR006523	Root Summer glycyrrhizin low producing strain	11.518
DRR006524	Root Summer glycyrrhizin low producing strain	11.488
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.790
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.650

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.066
SRR2868004	Drought Stress (root)	9.682
SRR2967015	Control (root)	9.995

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.951
SRR9715740	Leaf	4.620
SRR9715741	Leaf	4.204
SRR9715739	Root	5.414
SRR9715742	Root	13.262
SRR9715743	Root	11.060

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.937
SRR8749028	MeJA induced 9h	10.185
SRR8749029	MeJA induced 9h	8.357
SRR8749030	Uninduced	4.243
SRR8749031	Uninduced	4.973
SRR8749032	Uninduced	5.615

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.590
SRR8400027	Control - Root	14.130