Gene detail

Gene detail information of Glyur000126s00013674.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37940.1	6.00E-77	AGAMOUS-like 21
NR	XP_003612958.1	1.17E-139	MADS-box protein [Medicago truncatula]
Swissprot	tr\|Q6EP49\|MAD27_ORYSJ	9.00E-102	MADS-box transcription factor 27
trEMBL	tr\|A9YWS1\|A9YWS1_MEDTR	4.00E-140	MADS-box transcription factor {ECO:0000313\|EMBL:AES95916.1}

Sequence

Transcript Sequence

>Glyur000126s00013674.1
CCCAAGACCAAGTGCTANATACTTTTTTTCTGCTTATAAAGTTCTTGCGACTTGCGATGGAAAGGCAGCACCAGCACACACTCCTCTTGGCTCTTGCTGCACCATCAAAGACTCTGACTTATCTTTAATATCTGCCAAAAACCCTAGATAAGTGCATAAAGGTGTGAAGAAAGAAAGAAAGAAAGAATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAATTCGACCAACAGGCAAGTGACTTTCTCAAAGAGGAGAAAAGGTTTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCAGAAGTTGGACTTGTCATTTTCTCCAGCACTGGAAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAGTGATCGAGAGATATAACACGTGCAAGGAGGAACATCAACAACTGACAAATCCAGAGTCTGANGTCAAGTTTTGGCAAAGGGAGGCCGAAATCTTAAGGCAGCAACTACAGAATCTACAAGAAAACCATCGGCAAATGATGGGAGAACAACTTTACGGCTTGAGCATCAGAAACCTACAAGATCTGGAGAATCAACTGGAAATGAGTCTCCAAGGTGTCCGCATGAAAAAGGAAAGGATTCTGACAGATGAAATCCAAGAGCTGAACAGAAAGGGAGACCAAATCCATCAGGAAAACGTGGAACTTTATGAGAAGGTAAACCTCATTCAACAAGAAAACACACAACTGCACAAAAAGGTCTATGGCACACTAGATATGGCCCCAATAAGCAGAGATGCATTTGTTCCATTTCCATATGCAAGTGTTCATGCAGGAGGGTATCCACAAGCTTTGGTCCAACTTCAGCTATGCCAGCCTGAGCAAGAGCCCTGTGAGACCTCTGGCAGTGCCACAAAATGAAGATTAAGTCTTCATCCTTGCTATGAGATTATTTTAGTAATACATTTGGGAAGAAAGGAAAGATACGAATGACATTGCAATGCTGCAATAATAATCAATCACATTCAATGGTAAGTGAAAAGAGTTCTCGTGGATGAATTCTACTCACTCCACTCAGAGAATCCCGAGTAGCAGAGAAGAATATCCCACTTTCTGATTGAAATTGTATAAGTTTGATAAAAGCTTATCAGCACAACAACATTTGCATGTAAACTTACATATGGAAAATCTTGAACAGAATATTATCTCATCTTACACGCN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00126	308634	317088	-

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000126s00013674.1	PF00319.13	SRF-TF	10	59	7.70E-26
Glyur000126s00013674.1	PF01486.12	K-box	77	170	5.20E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.984
SRR1783600	control	12.848
SRR1783602	moderate drought stress	9.249
SRR1811619	moderate drought stress	9.299

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.584
DRR006520	Root Summer glycyrrhizin high producing strain	1.376
DRR006521	Root Winter glycyrrhizin high producing strain	1.304
DRR006522	Root Winter glycyrrhizin high producing strain	1.111
DRR006523	Root Summer glycyrrhizin low producing strain	29.322
DRR006524	Root Summer glycyrrhizin low producing strain	29.469
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.798
SRR2868004	Drought Stress (root)	18.286
SRR2967015	Control (root)	20.575

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.053
SRR9715741	Leaf	0.000
SRR9715739	Root	0.248
SRR9715742	Root	3.270
SRR9715743	Root	2.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.732
SRR8749028	MeJA induced 9h	80.715
SRR8749029	MeJA induced 9h	46.032
SRR8749030	Uninduced	72.524
SRR8749031	Uninduced	46.946
SRR8749032	Uninduced	78.885

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.854
SRR8400027	Control - Root	9.309