Gene detail

Gene detail information of Glyur000126s00013666

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55090.1	3.00E-92	ABC-2 type transporter family protein
NR	XP_007158327.1	0	hypothetical protein PHAVU_002G143300g [Phaseolus vulgaris]
COG	YP_004346365.1	8.00E-25	ABC transporter-like protein [Fluviicola taffensis DSM 16823]
Swissprot	tr\|Q9M2V6\|AB17G_ARATH	4.00E-131	ABC transporter G family member 17
trEMBL	tr\|V7CN35\|V7CN35_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30321.1}

Sequence

Transcript Sequence

>Glyur000126s00013666.1
ATGACTGATCAAGCCAATGGCTATTCTCTTGAAAGAGTGATTGACATAAAGAAAGAGAAACCAGTGATCAGTTTCACCGGTGGTCTTGAGTTCGAATCGCTCACTTACACGGTGACAAAGAAGAAGAAGGTTGAAGGGAAGTGGTTGAATGAAGATGTGGACTTGCTGCATGACATCACTGGGTATGCAAGAAAGGGATGCATCACTGCAGTGATGGGTCCAAGTGGGGCAGGGAAGTCAACTTTTCTTGATGGACTTGCTGGGAGGATTGCAAGTGGGAGCCTTAAAGGGAAGGTTTCCTTGGATGGGGTACCTGTGAATGCAAGCTTGATCAAGAGAAGCTCTGCTTATATCATGCAGGAAGATAGGCTTTTCCCTATGCTAACTGTTTATGAGACTTTGATGTTTGCTGCTGATTTCCGCTTGGGGCCACTCTCAGTTGCTGATAAGAAGAAGAGGGTAGAGAAGCTGATTGAGCAGCTTGGTCTATCATCATCTCGGAACACCTACATAGGAGATGAAGGGACAAGAGGAGTCTCTGGTGGAGAGCGTCGCAGGGTATCAATCGGCGTGGACATCATCCATGGACCCTCACTCCTGTTCCTGGATGAGCCAACATCAGGGCTAGACTCCACCAGTGCACACAGCGTGATCGAGAAGGTGCACGACATAGCACGCAGTGGCAGCACCGCACTTGCTGAGTTTGCACGCACTGGGATGAAACCGCCTCCTTTACCTGACCAAGAGGAAATGTCAATATTGTCCTCTGTTGTTGCACCCTCACCAGCACATTCTTGGCATAGAGAAGGTTCTAGATATGAGGAGAAATCTCAAGACTTCTCTTATTCGTCACAAGTGAGTGTTAGAAGGGACATGAATGACTTTGATCACAGTGTGAGAAGTCCATATAACAACAACACATCGATGTCATGGAGCGCCACTAATAGTGTAGGGTTCTTGAAATTCACACCTTCACGACTTAAAAATGAACAGNAGGTGCAGAGGCCTCCAAGCCATGCTTCCCCTGGCTATTATTCATACTCGAGTGAAATTCTTCAAGCAACTCCAACACCACACAGCAGTGACTACACAGTGAATGAGAATGACTACCTCACACCCCCAAATGGCAGCACACCAGAACACCACCATGGCCCAAAGTTTGCAAATTCATACATAGCAGAGACATGGATCCTCATGCGCCGCAACTTCATAAACATAAGGAGAACCCCAGAACTGTTCCTATCAAGGCTCATGGTCCTCACCTTCATGGGGTTCATGATGGCCACAATGTTCCACAACCCAAAACAAACCTTACAAGGCATCACGAACCGCCTCAGTTTCTTCATCTTCACCGTGTGCCTCTTCTTCTTCTCTTCCAATGACGCCGTCCCGGCTTTCATCCAAGAGAGGTTCATCTTCATCCGTGAGACTTCACACAATGCCTATAGAGCTTCCTCTTACACAATTGCTGGCTTAATTACCCATATGCCATTTCTTGCTCTCCAAGCTTTGTCCTATGCGGCAATTGTTTGGTTTGCTTTAAAGCTTCAAGGCCCTTTTCTCTACTTCTTGCTTGTTCTCTTTGTTTCTCTTCTTTCAACCAATTCATTTGTTGTGTTTGTGAGCTCAGTGGTTCCAAACTACATCTTGGGCTATGCTGCTGTGATTGCCTTCACTGCATTGTTCTTCTTGTTCTGTGGATACTTCTTGAGTAGCCAAGACATTCCTAGTTATTGGCGTTGGATGAACAAGGTTTCAACCATGACTTACCCTTATGAGGGGCTATTGATGAACCAATACCAAACCAATGATACCTTTGGGACCAATGGGGGGATGCCTGTTACTGGTTTTGATATCTTGAATAGTCTTCATATTGGGACTGATGAGTCTAAGAAGAGGAACAATGTGCTTATAATGTTGGGTTGGGCAGTGCTATATAGGATCTTGTTTTACATAATCCTTCGTTTTGCTTCAAAAAATCAGAGGTCATAGAGGGGGAAAAGTGTGTGTGTGTGACAAAAGTCAACCATTTAATTTGTTTTGTACTACAAACATATTGTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00126	254706	258664	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000126s00013666.1	PF00005.22	ABC_tran	56	207	1.10E-23
Glyur000126s00013666.1	PF01061.19	ABC2_membrane	395	600	1.10E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.677
SRR1783600	control	12.749
SRR1783602	moderate drought stress	18.983
SRR1811619	moderate drought stress	18.685

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.219
DRR006520	Root Summer glycyrrhizin high producing strain	2.082
DRR006521	Root Winter glycyrrhizin high producing strain	2.972
DRR006522	Root Winter glycyrrhizin high producing strain	3.202
DRR006523	Root Summer glycyrrhizin low producing strain	7.258
DRR006524	Root Summer glycyrrhizin low producing strain	6.970
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.377
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.389

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.557
SRR2868004	Drought Stress (root)	0.819
SRR2967015	Control (root)	0.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.161
SRR9715740	Leaf	1.211
SRR9715741	Leaf	0.371
SRR9715739	Root	1.493
SRR9715742	Root	1.498
SRR9715743	Root	1.821

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.034
SRR8749028	MeJA induced 9h	0.092
SRR8749029	MeJA induced 9h	0.079
SRR8749030	Uninduced	0.154
SRR8749031	Uninduced	0.128
SRR8749032	Uninduced	0.096

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.238
SRR8400027	Control - Root	1.053