Gene detail

Gene detail information of Glyur000126s00013663

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37920.1	2.00E-152
NR	XP_003612948.1	0	hypothetical protein MTR_5g030900 [Medicago truncatula]
Swissprot	tr\|Q84WN0\|Y4920_ARATH	0	Uncharacterized protein At4g37920, chloroplastic (Precursor)
trEMBL	tr\|A9YWR5\|A9YWR5_MEDTR	0	Endoribonuclease E-like protein {ECO:0000313\|EMBL:AES95906.1}

Sequence

Transcript Sequence

>Glyur000126s00013663.1
AAAAAGTTTGTATTTGTTAGTTAATCATGAAAGGATAAGATAANATACAAGGAAGATTTGGGCGATGTGTCGCTTGTTGTCCTCTGAAGAGTGAAGTGTGAGGCAAGTGTGAGGCAATTTGATGTTGTAGCCGAAGGAGCAACCTGAACCTGAACATGATGAAGGGGTACAAGGTATGTACCTCACCCTTCAACAGCACCACCACCTTCTTCTCCTCTTTCAATGATAATCTCTCCACAGGNTACCCCCTCACCCCTTCCTCCTGCACTGCTTCCAAGTTCTCTCCTTCCTTCCAAAACCAAAGAACAAAACTTATAGTTCAGAATTCCAAACCCCATTTTCTCCCATGCGCCTCTTTTCCCGGTCCACAAGCTAGCAGTGCTGCCACGGCTCAAGTGGAGGAGCAAGGAGAGATTGAAATTGCAAAGGGTTACACCATGACTCAATTTTGTGACAAGATGATAGACTTGTTTTTGAATGAGAAAACCAAATCAAGGGAATGGAGGAAGTTCCTGGTATTTAGGGAGGAGTGGAAGAAATACAGGGATAGCTTTTACATTAGGTGCCAAAGAAGGGCAGACATGGAGAATGAACCAACTATGAAGGAAAAATTTATTTCATTGGGGAGAAGGGTGAAGAAGATTGACGATGAAATGGAAGGACACTGTGAACTTCTCAAGGAGATACAAGATTTTCCGACTGACATTAATGCCATAGTCGCACGAAGGCGCAAAGACTTTACAGGAGAATTCTTCCGCTACCTCACTCTTATTGCAGACATGTATGACAGCTTGGAGGATNGTGATGGAATTGCGAGGCTGGGGGCTAGATGCTTATCTGCTGTCAGTGCGTACGNTAATACTCTAAAGAATATGGAGACATTAGATACTGCCCAGGCCAAATTTGATGATATCCTCAATTCTCCTTCTGTTGATGTAGCTTGTCAGAAGATTAAAAGCCTTGCAAAGGCAAAGGAACTTGATTCTTCATTGATATTGCTGATAAGTGGTGCTTGGGCTAAAGCAAAAGAATCTACAACAATGAAGAATGAGGTGAAAGAGATAATGTACCAATTATACAAGGCCACAAAGAGCAGCCTAAGGAGTATTACTCCAAAAGAAATAAAGCTACTCAAGCATTTGTTAAACATCATAGATCCCGAGGAGCGATTCTCTGCATTGGCAACAGCTTTCTCCCCTGGTGATGAACATGAAGCCAAGGATCCTAATGCTTTATACACCACACCAAAAGAGCTGCACAAATGGATACAAATCATGCTTGATGCATATAATCTGAACAAGGAAGAATCAGATTTGAGAGAAGCCAGGCAGATGAGTCAACCTATAGTTATTCAGAGGTTGTTTATCCTCAAGGATACCATTGAGAAGGAATATATGGAAAAAAACACATCTCAAAAGTCAGAGACAGAAGATGACACTGAATCAGAAGTGTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00126	247565	250956	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.418
SRR1783600	control	1.429
SRR1783602	moderate drought stress	2.185
SRR1811619	moderate drought stress	2.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.563
DRR006520	Root Summer glycyrrhizin high producing strain	2.436
DRR006521	Root Winter glycyrrhizin high producing strain	1.923
DRR006522	Root Winter glycyrrhizin high producing strain	1.805
DRR006523	Root Summer glycyrrhizin low producing strain	3.469
DRR006524	Root Summer glycyrrhizin low producing strain	3.175
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.751
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.695

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.651
SRR2868004	Drought Stress (root)	2.598
SRR2967015	Control (root)	4.298

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.767
SRR9715740	Leaf	18.725
SRR9715741	Leaf	7.753
SRR9715739	Root	0.238
SRR9715742	Root	1.887
SRR9715743	Root	0.978

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.081
SRR8749028	MeJA induced 9h	3.119
SRR8749029	MeJA induced 9h	2.057
SRR8749030	Uninduced	0.387
SRR8749031	Uninduced	0.316
SRR8749032	Uninduced	0.545

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.990
SRR8400027	Control - Root	3.337