Gene detail information of Glyur000126s00013653 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65660.1 | 9.00E-32 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_004512543.1 | 6.38E-56 | PREDICTED: uncharacterized protein At5g65660-like [Cicer arietinum] |
| Swissprot | tr|Q9LSK9|Y5566_ARATH | 7.00E-47 | Uncharacterized protein At5g65660 |
| trEMBL | tr|I3S1T5|I3S1T5_LOTJA | 2.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:AFK34227.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00126 | 193406 | 194393 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.528 |
| SRR1783600 | control | 6.276 |
| SRR1783602 | moderate drought stress | 6.698 |
| SRR1811619 | moderate drought stress | 6.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 116.808 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 116.555 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 226.751 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 221.682 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 135.087 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 134.769 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.450 |
| SRR2868004 | Drought Stress (root) | 17.023 |
| SRR2967015 | Control (root) | 13.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.246 |
| SRR9715740 | Leaf | 4.366 |
| SRR9715741 | Leaf | 4.146 |
| SRR9715739 | Root | 4.394 |
| SRR9715742 | Root | 9.850 |
| SRR9715743 | Root | 9.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.823 |
| SRR8749028 | MeJA induced 9h | 173.046 |
| SRR8749029 | MeJA induced 9h | 252.222 |
| SRR8749030 | Uninduced | 49.439 |
| SRR8749031 | Uninduced | 184.239 |
| SRR8749032 | Uninduced | 150.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.700 |
| SRR8400027 | Control - Root | 10.050 |