Gene detail

Gene detail information of Glyur000126s00013642

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46800.1	2.00E-128	Mitochondrial substrate carrier family protein
NR	XP_004512531.1	0	PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein-like [Cicer arietinum]
Swissprot	tr\|Q93XM7\|MCAT_ARATH	4.00E-172	Mitochondrial carnitine/acylcarnitine carrier-like protein
trEMBL	tr\|I1J4W1\|I1J4W1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G02300.1}

Sequence

Transcript Sequence

>Glyur000126s00013642.1
GTTTTCTTCCATATTGTTCAAATGGGCTGTTTTCTTAAGGACTGTACATTTGTTTTTGTGGTAATTGTACTTCACATGTTCAAGTTATTTTGTCTTAATTCTCTATGTTCCCTTGTTGGAATTATGTTTTTTTTTTTTTTCAGATGGGAGATGTGGCTAAGGACCTTACGGCTGGGACTGTTGGAGGGGCAGCACAACTGATAGTTGGACACCCATTTGACACCATTAAGGTGAAGCTCCAAAGCCAGCCCACACCACTTCCTGGCCAGCTTCCCAAGTATTCTGGTGCAATTGATGCTGTCAAGCAGACAATAGCAGCTGAAGGGTCAAGGGGTTTATACAAAGGTATGGGAGCCCCACTTGCTACAGTAGCTGCCTTCAATGCTGTCCTGTTTACAGTTAGGGGCCAAATGGAGGCATTGTTGAGGTCCCATCCTGGTGCTCCCCTCACAGTACCTCAGCAGGTTCTTTGTGGAGCTGGAGCTGGACTTTCTGTTTCCTTTCTAGCTTGCCCCACTGAACTGATCAAATGCAGGTTGCAAGCACAGGGTGCTCTAGCTGGTTCTGGAACAGCTTCAGTGGCAGTGAAATATGGAGGACCCATGGATGTGGCCAGGCAAGTTCTTAGGTCAGAAGGGGGCATAAAAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGCGCGTGAAGTACCCGGAAACGCCGCAATGTTCGGTGTATATGAAGCAACAAAGCAATTACTCGCAGGAGGCACTGATACCTCTGGACTAGGTAGAGGTTCTCTGGTGGTTGCTGGAGGCTTGGCTGGAGGTTCCTTCTGGTTTATGGTTTACCCAACTGATGTTATTAAGAGTGTGATTCAAATAGATGATTANAGAAATCCAAAGTTCTCTGGTTCAATTGATGCTTTCAGAAGGATTAAAGCTTCTGAGGGGTTCAAAGGCCTTTATAAAGGTTTCGGTCCTGCGATGGCCCGAAGTGTTCCTGCCAATGCAGCATGCTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGATTCATTCATAAGCAGGCTTCATAAGGGTATCATTGACATTGAGTACCCTGAGTGCCTAACTTTCTTTTCTTTTTTTTAATTTCAATTCTCACAACATTTTTATTTCATGCATTGCAATATGGCCACAAAAGGCTTATCTCTATAATTGCTTCAAGGAATCATTCTTTCAGCAATGGTAATGCAAGCAACCTTTTATTTTTTTTCTTCTCATGCTGGAAATGTTATTAATGCTAAATATTAGGATGGAATCATTTGAACTTGCAAGAATCAGATCACACATTGTATATCTTAACTAACAAACCTGTCAAAGTTTGAACTTCAGAAAGATAAGTGTCCATCATACATTTGTTGATTCTGAAGTCTGAAAAGTTGATGGCCATATTTGTATCCAGTTGCATGGCTTCTGAAGGGCAGAATGATTACTTCCCATTTCAATGTCATGGAAGTGGTGTCATGTATTCGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00126	57433	59529	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000126s00013642.1	PF00153.22	Mito_carr	17	109	7.30E-18
Glyur000126s00013642.1	PF00153.22	Mito_carr	115	213	7.70E-22
Glyur000126s00013642.1	PF00153.22	Mito_carr	227	309	1.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.619
SRR1783600	control	2.597
SRR1783602	moderate drought stress	3.303
SRR1811619	moderate drought stress	3.314

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.411
DRR006520	Root Summer glycyrrhizin high producing strain	5.413
DRR006521	Root Winter glycyrrhizin high producing strain	7.263
DRR006522	Root Winter glycyrrhizin high producing strain	6.881
DRR006523	Root Summer glycyrrhizin low producing strain	4.932
DRR006524	Root Summer glycyrrhizin low producing strain	5.274
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.638
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.709

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.116
SRR2868004	Drought Stress (root)	20.979
SRR2967015	Control (root)	19.011

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.846
SRR9715740	Leaf	6.727
SRR9715741	Leaf	7.896
SRR9715739	Root	13.687
SRR9715742	Root	11.311
SRR9715743	Root	11.542

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.244
SRR8749028	MeJA induced 9h	7.209
SRR8749029	MeJA induced 9h	8.949
SRR8749030	Uninduced	10.918
SRR8749031	Uninduced	7.290
SRR8749032	Uninduced	9.305

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.869
SRR8400027	Control - Root	14.078