Gene detail

Gene detail information of Glyur000125s00010048

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26310.1	4.00E-45	elongation factor P (EF-P) family protein
NR	XP_004502202.1	1.52E-112	PREDICTED: elongation factor P-like [Cicer arietinum]
COG	YP_007513326.1	1.00E-30	elongation factor P [Bradyrhizobium oligotrophicum S58]
trEMBL	tr\|I1JVU1\|I1JVU1_SOYBN	3.00E-112	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G14630.1}

Sequence

Transcript Sequence

>Glyur000125s00010048.1
ATGCAAGCTCTGATGAGGCTGAAGCTCAGGCTCCCCAATTCCAACTTCAATCCACTCTTCAGACTTTCATCCTATTCAAATCCTTCTCCTCCTCCTCCATGCTCTCCGCCATATTCACTACCTTCACCCCTTCCTTGCTTTTCCGCTTACTCCACCGCCACCAACCTGTTCACCGCTCCGTGGTCCGCCACTCAATGCCGCGGAATCAAAATTAGAGTCGGAAATATCATTGCAAAACAAGGGCGCATCTACGAGGTTCTTAGAGTAGATCACTCTCATGAAGGAAGAGGAAAAGCCACAAGGAAGGTGGAACTTCGTGACATTGGCCAGGGAAACAAGGTAACNCAACGAATGGGTACTGATGAGGATTTTGAAAGGGTCCATGCTCAGGAAAAGACTTTCATCCCTGATACGTTGGATCAAATTGAAGTTTCCAAAGACTTGTTCGGCAAGAATTGTTTATATCTACAAGATGAAATGAAAGTTAAGGTGCAATTTTATGATGACAAACCTTTATCTGCATCAGTTCCAAAACGTGTAACATGCATTGTCAAGGAAGGGATTGCAGCCACTCCGAGGAATAAGAAGGTAGTACTGGACAATGGCCTTACGGTTGAAGTTCCGCCTCACATTATAGNTGGTGATGCCATAGTTGTTAATACAGAGGACAACTCTTACATTGAAAGGGCCAAGGCATAGGTGGAGCTTAGCCAGAATTTGAGCAGACAGACACCTGCGTCNTGCGTGACACAAATATCCAATATGTAATTGTCACGAGTTTTGAATCAAATGTGACCTTGTTTATCCAAACCTCACCCTCACCCTCCCCCTATTTCTCTCTCTCGATAATAAGGCGGCAATGAATTTGGATGTACTTGTGATATCNGTATTTTTGTGCGTATCCTGATTGTTGGTTCAGTTTATGCAACAGCGGAGAGAAGCATTGGAAAATTATCTCAATTCTTGAAGTTTTAGATGATAAAAAAATAATTCTTATCGACNGTTATAGATTCCATTGATTTAATTATCAGTGGCTAAGTGTCCAACAAATGCAAGATACTTGGATTCTTAACTTGAGATATTTTCAAGCCATCCCTTCAATTTTAAGGCAAGTAAAGATGGTTGCTCACTCCTTAGCAAGGGTGGCTACATTGTGGTCTAGCCTTGGAGTTTTTGATTNATTACCATCTTGTATTTTTGAATCTAGTCTAATAAAATGATGCTATTTCCTTCACACACACTCCTTAGCAAGGGTGGCTATATTGTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00125	265657	271927	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006414 translational elongation

GO:0043043 peptide biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0003746 translation elongation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000125s00010048.1	PF08207.7	EFP_N	70	124	2.40E-09
Glyur000125s00010048.1	PF01132.15	EFP	137	172	8.40E-08
Glyur000125s00010048.1	PF09285.6	Elong-fact-P_C	187	229	1.10E-12
Glyur000125s00010048.2	PF08207.7	EFP_N	70	124	1.90E-09
Glyur000125s00010048.2	PF09285.6	Elong-fact-P_C	155	197	8.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.312
SRR1783600	control	36.845
SRR1783602	moderate drought stress	32.607
SRR1811619	moderate drought stress	32.880

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.874
DRR006520	Root Summer glycyrrhizin high producing strain	24.545
DRR006521	Root Winter glycyrrhizin high producing strain	16.398
DRR006522	Root Winter glycyrrhizin high producing strain	16.896
DRR006523	Root Summer glycyrrhizin low producing strain	23.247
DRR006524	Root Summer glycyrrhizin low producing strain	23.002
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.508
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.878

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.689
SRR2868004	Drought Stress (root)	12.037
SRR2967015	Control (root)	10.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.482
SRR9715740	Leaf	12.714
SRR9715741	Leaf	15.250
SRR9715739	Root	7.663
SRR9715742	Root	12.015
SRR9715743	Root	11.077

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.644
SRR8749028	MeJA induced 9h	8.629
SRR8749029	MeJA induced 9h	9.124
SRR8749030	Uninduced	4.283
SRR8749031	Uninduced	1.127
SRR8749032	Uninduced	2.403

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.207
SRR8400027	Control - Root	20.254