Gene detail

Gene detail information of Glyur000125s00010047

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19760.1	5.00E-113	Mitochondrial substrate carrier family protein
NR	XP_007014662.1	1.24E-156	Mitochondrial substrate carrier family protein [Theobroma cacao]
Swissprot	tr\|Q9C5M0\|DTC_ARATH	2.00E-141	Mitochondrial dicarboxylate/tricarboxylate transporter DTC
trEMBL	tr\|A0A061GS01\|A0A061GS01_THECC	5.00E-157	Mitochondrial substrate carrier family protein {ECO:0000313\|EMBL:EOY32281.1}

Sequence

Transcript Sequence

>Glyur000125s00010047.1
ATGGGAGGAGGCTCTGAGTCTCAGAAAGCCAAACCAGCTAGCATGTGGCCTAAAGTGAAGCCTTTTGTCAATGGAGGAGCCTCTGGCATGCTTGCCACCTGTGTGAGGATTCAACTGGGTCAAGGATCTGCTGCCTATGTCACATCTAACATGTTCAAGAATGAGGGGTCTTTCCGCTGGATTACTCAGACAGGCTACTTACACCACAGCTCGACTTGGATCATTCAGGCAAATGATGGGAAACCCCTGCCGCTGTATCAGAAAGCTGTGTGTGGGTTGAGTGCTGGTGCTATTGGAGCAATTGTTGGTAGTCCAGCAGATTTGGCACTCATCCGTATGCAGGCTGATGCAACTCTACCTGCTGCTCAGCGCAGAAACTACACAAATGCNTTCCATGCCCTCTATCGTATTCTTGCAGATGAAGGCCTTTTGGCACTTTGGAAAGGTGCTGGCCCTACTGTTGTGAGAGCCATGGCATTGAACATGGGGATGCTTGCCTCTTATGACCAATCTGTTGAGTTCTTCAAGGATTCCCTTGGCCTAGGGGAAGCTGCTACTGTCCTAGGTGCAAGTACGGTTTCAGGATTTTTTGCTTCGGTTTGCAGTCTNCCATTTGACTATGTTAAGACACAGATTCAGAAGATGCAGCCTGATGCTGATGGAAAATATCCATACACAGGNTCTGTTGATTGTGCTATCAAAACGTTCAAATCAGGAGGACCCTTTAAGTTTTATACAGGATTCCCTGTCTATTTCGTCAGAATTGCTCCTCATATGACCTGGATTTCCCTCAACCAGATCCAAAAATTGGAGAAATCTTTTGGGTTGTGAATTCAATTCAATTATGATACATATGGCTCTCTAATCCCCCTTGAACTCAAGGCTCAAGCTTTTGAATAGTATGTAGGCTGTGGCCTCCGTTTGTCAACTTCACAAAACTTCATGCAACAATGCACCAACCATGGAGTAAACGTATTTTACATCCTAGTTAGTCATGAATAATATAATAAGGTGTGGTTGTGGCTAAGCAGAACTGTATATTCTATTTTTCNGATGGGCAAGAAAGGGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00125	262934	265462	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000125s00010047.1	PF00153.22	Mito_carr	82	177	6.00E-20
Glyur000125s00010047.1	PF00153.22	Mito_carr	188	258	5.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.125
SRR1783600	control	0.106
SRR1783602	moderate drought stress	0.259
SRR1811619	moderate drought stress	0.273

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.100
DRR006520	Root Summer glycyrrhizin high producing strain	0.066
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	136.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	138.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.207
SRR2868004	Drought Stress (root)	0.318
SRR2967015	Control (root)	0.331

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.521
SRR9715740	Leaf	113.717
SRR9715741	Leaf	42.452
SRR9715739	Root	0.000
SRR9715742	Root	0.151
SRR9715743	Root	0.112

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.009
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.087
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.075

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.531
SRR8400027	Control - Root	0.131