Gene detail information of Glyur000125s00010035 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35150.1 | 5.00E-27 | O-methyltransferase family protein |
| NR | XP_003601618.1 | 1.80E-45 | O-methyltransferase [Medicago truncatula] |
| COG | YP_631759.1 | 2.00E-11 | O-methyltransferase [Myxococcus xanthus DK 1622] |
| Swissprot | tr|Q6WUC2|7OMT_PAPSO | 9.00E-25 | (R,S)-reticuline 7-O-methyltransferase |
| trEMBL | tr|G7JA41|G7JA41_MEDTR | 7.00E-46 | Flavonoid O-methyltransferase-like protein {ECO:0000313|EMBL:AES71869.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00125 | 189507 | 190772 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000125s00010035.1 | PF00891.13 | Methyltransf_2 | 5 | 102 | 2.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.098 |
| SRR1783600 | control | 69.349 |
| SRR1783602 | moderate drought stress | 20.239 |
| SRR1811619 | moderate drought stress | 21.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.922 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.033 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.134 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.131 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.721 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.440 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 901.978 |
| SRR2868004 | Drought Stress (root) | 806.198 |
| SRR2967015 | Control (root) | 725.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.857 |
| SRR9715740 | Leaf | 0.150 |
| SRR9715741 | Leaf | 0.462 |
| SRR9715739 | Root | 49.093 |
| SRR9715742 | Root | 114.852 |
| SRR9715743 | Root | 108.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.477 |
| SRR8749028 | MeJA induced 9h | 0.468 |
| SRR8749029 | MeJA induced 9h | 0.668 |
| SRR8749030 | Uninduced | 1.466 |
| SRR8749031 | Uninduced | 0.989 |
| SRR8749032 | Uninduced | 1.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 334.291 |
| SRR8400027 | Control - Root | 326.837 |