Gene detail information of Glyur000125s00010032 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67140.1 | 6.00E-23 | F-box/RNI-like superfamily protein |
| NR | AFK43032.1 | 2.44E-37 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9FH99|FB302_ARATH | 6.00E-27 | F-box protein At5g67140 |
| trEMBL | tr|I3SRZ0|I3SRZ0_LOTJA | 9.00E-38 | Uncharacterized protein {ECO:0000313|EMBL:AFK43032.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00125 | 180595 | 183445 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.712 |
| SRR1783600 | control | 7.647 |
| SRR1783602 | moderate drought stress | 15.942 |
| SRR1811619 | moderate drought stress | 14.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.897 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.451 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.442 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.737 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.156 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.395 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.480 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.562 |
| SRR2868004 | Drought Stress (root) | 29.134 |
| SRR2967015 | Control (root) | 30.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.297 |
| SRR9715740 | Leaf | 9.675 |
| SRR9715741 | Leaf | 8.232 |
| SRR9715739 | Root | 6.213 |
| SRR9715742 | Root | 9.181 |
| SRR9715743 | Root | 10.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.726 |
| SRR8749028 | MeJA induced 9h | 25.446 |
| SRR8749029 | MeJA induced 9h | 7.669 |
| SRR8749030 | Uninduced | 13.829 |
| SRR8749031 | Uninduced | 10.567 |
| SRR8749032 | Uninduced | 10.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.113 |
| SRR8400027 | Control - Root | 29.915 |