Gene detail

Gene detail information of Glyur000125s00010031

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35160.1	3.00E-87	O-methyltransferase family protein
NR	XP_003601618.1	0	O-methyltransferase [Medicago truncatula]
COG	YP_007203445.1	4.00E-34	methylase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q6WUC2\|7OMT_PAPSO	2.00E-89	(R,S)-reticuline 7-O-methyltransferase
trEMBL	tr\|G7JA41\|G7JA41_MEDTR	0	Flavonoid O-methyltransferase-like protein {ECO:0000313\|EMBL:AES71869.1}

Sequence

Transcript Sequence

>Glyur000125s00010031.1
CGACAATAAACTGAATTTAAAATTCGAACTAAAATCCTGAGCCGACCGATCTTGATCCGACGACTGTGATGGCCCTGACTGCATGACTGCACCGTTTTGCTGACTGCACCCAATCCGAGTCCCTGAAATTGGTCTCAACCATTCATTTACCAAACAATGTTATTTCAAGTACAACCATTTGTGATGTGTTGCTAACTTCTATAAATAAAGCTTTCATGTATCAACAAAGTCGTCATAGTAGTGAATAAGAGAATAAGAGAAATTTCACTACATATGAGAGAAACCCAAAGTGAGCTAACGTTGGGGTGGGAGAAGAAGGAAGAAGAAGAAGCACAAGCTCAAGCAGATATCTGGAAGTACGCATTTGGGTTTGTAGAATTGGCAGTGGTGAGATGTGCCATTGAACTTGGCATAGCCGAAGCCGTTGAAAGGCATGGAAGACCCATGACACTGTTGGAGTTATCATCAACTCTAGGATGTGACCCTCCATACCTTAACCGCATCATGAGATTCTTAACACATAGGAAGATATTCAAAGCCATACCTAATAGTCATGACTCATGCCCCAACTATGTTCAGACACTGCATTCTCGTTGTTTGATGAGAACCGGCAAACNAAGCATGGCTGCTATTCTTTTGTTGGAGAGTAGTCCTGTGATGCTATCACCTTGGCTTGGTCTATGTTCTCGTGTTTCGGTTAATGGCAACCCCTTGTTTGAAAAGGTCCACAATGAAGATGTGTGGCACTATGCTGCGGCAAACCTTGATCATGGGAATCTCATCAACGATGCTATGGCATGTGGTGCTAACCTTATTCTGCCTGCCATCATTGAAGGTTGTAGGGAGGCATTTGAGGGTATGAACACCTTGGTGGATGTGGGTGGGGGGAATGGCACCACAATGCGCCTCCTCACCAAGGCTTGTCCTTGGATTCAAGGAATAACCTTTGATCTTCCTCATGTCATCGCTGCGGTGCCAAAGGGTGATGGGGTGGAATATGTGGCTGGTGACATGTTCTCAAGTGTTCCCAAAGCTGATGCTGTATTAATTAAGTGGGTTTTGCATGATTGGGGAGATGAGGAGTGCATCCAAATCTTAAAGAACTGCAGGGAAGCTATTCCAAAAGAAAAAGGAACAGTTATTATTGTGGAAGCAATCATTGAAGAAGAAGGAAAACACGATAATTTTAAAGACATCGGGTTAATGTTGGACATGGTGATGATGGCACACACTAACTTTGGCAAAGAACGGACACTGAAAGAGTGGGAACATTTGATCAAAATGGCAGGATTCAATGCATACACTGTGAAATCTACCAATGTTGTGCAGCGTGTAATTTTGGCTTCCTGCTAAAATGACAAAACAAACCACGAAAATAATAATAAGAAAAAGGCTTCCAATTTTTGTCATCAAAACACATCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00125	175779	177566	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0008168 methyltransferase activity

GO:0008171 O-methyltransferase activity

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000125s00010031.1	PF08100.6	Dimerisation	38	82	2.10E-09
Glyur000125s00010031.1	PF00891.13	Methyltransf_2	99	336	3.70E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.754
SRR1783600	control	8.497
SRR1783602	moderate drought stress	8.439
SRR1811619	moderate drought stress	8.232

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.646
DRR006520	Root Summer glycyrrhizin high producing strain	4.396
DRR006521	Root Winter glycyrrhizin high producing strain	11.691
DRR006522	Root Winter glycyrrhizin high producing strain	10.685
DRR006523	Root Summer glycyrrhizin low producing strain	11.447
DRR006524	Root Summer glycyrrhizin low producing strain	11.638
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.426
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.261

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.166
SRR2868004	Drought Stress (root)	0.370
SRR2967015	Control (root)	0.139

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.027
SRR9715740	Leaf	6.739
SRR9715741	Leaf	3.557
SRR9715739	Root	0.174
SRR9715742	Root	0.990
SRR9715743	Root	0.838

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.074
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.039
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.708
SRR8400027	Control - Root	13.308