Gene detail

Gene detail information of Glyur000125s00010021.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47430.1	0	Signal transduction histidine kinase
NR	XP_004496150.1	0	PREDICTED: histidine kinase CKI1-like [Cicer arietinum]
COG	YP_007082232.1	2.00E-32	signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|O22267\|CKI1_ARATH	0	Histidine kinase CKI1
trEMBL	tr\|A0A072VZ96\|A0A072VZ96_MEDTR	0	Histidine kinase 1 {ECO:0000313\|EMBL:KEH43350.1}

Sequence

Transcript Sequence

>Glyur000125s00010021.2
CACTGTAATTGATTGTAGTTGATTTCAGCGTTGTGCCAAATATCAAAGGGATGTGGGATTCCTTGCCGGAAGTAATCGTGGTGGAAATTCTTCAGAGGCTTCCAGTGAAGTCCCTTGTGAAGTGTACCCGTGTGTGCAAGTCATGGCGTTCCATCATCACCAACCCCTCCTTCATCTCCCTCCACCTTCGCAGCCCCTCTTCACCACCACCCTTCCTCCTCCTCCAGCTCTGCAACGAGCTCGCCCCTCCCAACCTCATCGACTACTCTCTCCGCCATGACGACCCCTTCCTCACCGACTCCCATTCCTCCCTCTTCCTTCCCCCTTCCTTCCCTCACCCCGAGTTCTCCGTCGTCGGCATCTCCCGCGGCCTCGTCTGCCTCACCGCCGGCGAACACTCCCTCACCCTCCTCATTTGCAACCCCTGCATCCGCCGCTTCATCAGACTCCCCGAACCCCACGATTACCCTTCTTTATACAACGCCTCCGTTGCCTTCGGCTTCGATTCTCATAACGATGACTTCAAGGTCGTGAGGATTTCTTGCATGTTGGATGACTATAGCCACGGCCTCACTGTTCCCAAGGTTGGGATCTACTCTCTCGCATCTGGGTTCTGGAGGAAGAACCTCGCTTCTGCTCCCGTGTGTACTCTGTGTTTCGTTGGTAGAGATGCTCCTTATGGTTTTGTTCATGGGTTGGTTCATTGGGGTGCCAAACGCAGGGTGAATAACGATGATCCTCATGCTTGGTACCATTTTGTTTTGTCCTATAGTTTTGAGGATGAGGTCTTCGGTGAGGTATTGCTGCCGGAGACATTGGCCCATGTCTCCTCCTATGCGGTTACCGTTACGGTTGTTGGAGGGAACCGGAACGGGAAGGGTCTGCCTCTGACGGTGTACCGTGTGAGTGGTGGTTTGCCATCTTATGGTGACATATGGGTGATGAAAGAGTACGGTGTTGTGGGGTCTTGGACTAAGGTGTTCTCTTTTGATCTGAGGGGCTTTTGGCTTGAAGCGCCGTCATTGGGGATAACGGTGACCGGCGTGACGGCTCCACCGTCGGCTATGTGCGTGAGGAATGGCGGAGAGGTGCTGCTGCTGATGGATGTGGCGGGAAAGGGTTGTTTGTATTCGCTGGATGTTGAGAGGAAGACATTTACGGACCTTGGAATTGGAGGAGAAGGGTACACATGGTATCTTTATTCTGGTTATTATACTGAGACCTTAGTTTTACTCAACGACAATGCATATGGTGCTCTGTTAGCTATTGGCTCATTGACACCATGTTGGTATGTCATGGTCACACATATGGAGAAATATGCAAATTTGAACTCAGAAAATATTGTATCCCAATTGCAATCAGAAATTGANTACTCAGCCGAACTGTTACAGCCAATGAAATCATCATCAACAAATCTAGCAAGATTATTGAGTTCAGCCCTTGATTCTACTAATATCTCTTTCTCTGATATTGACACCAAGGTGGCTCCGATATTATTTCAAGCATTTGAGACAGTTCCTCACTTAACCCAAATCTCATACATAGGGATGGAAGGTCTCTTTTTCTCATACTACAGTGATCATTATCAAACTCTGGCAATGTACTCTAACTCATCATCCTCTTCACCTTCTAGTGGGGGTGCCTCAAATAAAACCTTATACTATATCCAGCCTGTGAATCGTGAAACTGGAGAGGTTTATGGTGAAGCCATAATCTCTAACCCCTCTATCAATGCAAGTTGGATTCAGGAAGCAGTTAATCTTTCAGATGGGTTTGCCTCATTGGGAACCAAGTGGAGCAATGGCCATGATCTTTTGTTCNTCAGTTCAGCTAAAATCACAAGAATGGGAGTGATCTCTCTGGGATTTTCAGCAAAAGCAATAACTGATTTTGTCACTTGCATTAATCCTCAAGGCACAAGCTCATATTTGATTACCAGAGATGGAAAAGTTCTTGTTGAAGGGATTCAACACATCCGTTTGGTTGTTTCTAATGATACCGTTTCCTTCCAATGGGTGAATGCAAGTGGTACTGCGATAAGGAATGAGGGCACTGTTTCATGCAAGGATGAAGCCGTTGCTTCTAGTTTGAACATTCAGGATGCTGAATATTTAATCCACTGCCACCCCATTGATATAATGGGAATACAATCGGTGTATGTTTTGGCTGTCCCACGAAATGGATTTGTCAGCTTTGATCTCAATTATAAGAAGAAGGGATTGGCACTGTTTATTGTAACGACAGTCATGATACTTGTTGCTGCCTTCAGTTTTCTATTCATAAATGCTAGAGCAACCAGGAGAGAAATGCATTTGTGTGCCTCACTCATCAAACAAAAGGAAGCTACCCACCAAGCTGAGCGAAAGAATATGAACAAGAGTCTTGCTTTTGCTAGTGCCAGCCATGACGTTCGCACATCTCTCGCAGGCCTTACTGCTTTGATAGAAATTTCCTCTGAGTTAGTTGATCGTGGTTCAGAATTGGAGACCAGATTAACAGAAATGGAGGAGTGTACCCAAGACTTACTAGGCCTATTGAACTCTATACTTGACACAAGCAAAATTGAGGTAGGAAAAATGCAACTCAAGGAGGAGGAATTTGATATATCCCATATCCTGGAAGATGTGGTTGATTTATTCCATCTCGTGGCCATGAAGAAAGGCNTAGATCTTGTATTGGACCCCTGTAATGGTTCTGTTATAAAATATTCACGCGTGAAAGGTGACAAGGGAAAACTTAAACAAGTTTTGTGTAATTTACTGAACAATGCTGTCAAATTTACCAATGAAGGGCACATAGCAGTTCGGGCGTGGGCTCAGAAGCCAACATTACATGGCGCAATAATCAAGACTAATCAACATAGTTTCATGGAACATTTATCGTGCTTGTTTTATAAGAAAAACAAAGCACATGAGGACCTAGAAAAAGCCATGAATTCAATCCAACAAGATCCGCACTCTATGGATTTTGTGTTTGAAGTGGATGATACAGGAAAAGGAATTCCCAAAGAGAATTACATGTCTGTGTTTGAGAATTATGTTCAAGTCAAAGAAACTGCTATTGGCCAAGAAGGAACAGGCTTGGGACTTGGGATTGTGCAGTCATTGGTACGTTTGATGCATGGAGATATTGGAATTGTGGACAAGGATATTGGCGAAAAAGGAACATGTTTCAGGTTCAATGTGCTCCTCACTTTATGTGAGAGTGANACAGTGATGGATGGTAGCACAAGGGAAGATCTTGAGTATGGATCAGGTGACAGGAACCAACGTCAGGGGCGAACCATTCACGCTACTAGTTCTGACTCAAACGTGTGTTTCATGAGTCCCAGGTTACATATGTGCAGCTCTAGTAGTCCTAGGCCTGAGGCTTCCCATGTTGTTCTTTTGATTGGAGACAAGGAGCGCCGAAGGACTTGTCAAAGGTTCATGGAGAGAATAGGGATTAAAGTTAAGATTGTCAAATGTTGGGAGCATCTGTTTGATACTCTGGAGAAGATCAAACTGAAGGGTCGCCGCCATTATTCCTGTGGCCAAAGTTCTCCAANGTCTTCTAATTTGAGTTCTGAGTCCACATCTCATAATGATAATTCATTTGGCAGAGCCCGCAGAGGTGTTCCTTTGAGTGCTATGGATCATGGANCTGAGTATATACCTTCAATGTTCAAAAAGACAAGTATCGGAGCTGCCCCGGGTTTCATCTTGATTGTCATTGACGCTAATGCAGGACCATTTTCTGAACTCCGTAGGATCGTATCCAACTTCAAGAAAGACCTTCACAATCCCAACCGTTGTAATGTTGTTTGGCTGGATAAGCCACATATCCACAGTATCAATTCCAAAACAATTGATGAAANTGACATTGTCATATCCAAACCATTTCATGGTAGTCGATTGTTCCAAGTTATAATGCTTCTTCCTGAGTACGGTGGTGGTGCTTGGCAAAGCAGTAGTAAGAGAGAAAGTAGCCATGATGATAGAGCTGGAAAGACTTTTAGTAGTAGGGATTCAAGCTTATCGAAATATCAGTCCCCTCGGTGGATGGACCGATCGGAAGTGTCCCCATCCGATGAAAGCCCATGTCTAAGCGCTGAACAGAAATCCTCCGTTAGAAAATCCCCTGTTCATATTCATCATGGAGAAATACAAAAATGTGGAGATCACTCAAGCTGTTGCAAACCCTTATGTGGCAAGAAAATTTTGGTTGTTGAGGACAATGAAATGTTACGCAAGACAGCTTTGGCTACTCTGATTCCCCTTGGTGCAAGTATCGAGCAATGTGAGAATGGTGAGCAGGCTGTGAGACTAGTTCATGAGGGTCTAACCAAGGATTTTCCTAATCCTCCTTATGATTACATCTTAATGGACTGCCTGATGCCAGTGATGGATGGGTGTGAGGCAACAAGGCGGATACGAGTGATGGAGAAGCCCTACGGTGTTCACATCCCTATCATTGCATTAACTGCAGACACTGACAGAACGATGACAGTGACTGGAATGGACTTTCATATAGAGAAGCCCCTTAGGAGAGAGCATTTACTTGAAGCCATCCGATACTTACACAGAAAGGACTGACATAATGTAAAAGTCTTGCCGGTATCCGTACGCACGCGGGAAAATTGGA

Protein Sequence

>Glyur000125s00010021.2
MWDSLPEVIVVEILQRLPVKSLVKCTRVCKSWRSIITNPSFISLHLRSPSSPPPFLLLQLCNELAPPNLIDYSLRHDDPFLTDSHSSLFLPPSFPHPEFSVVGISRGLVCLTAGEHSLTLLICNPCIRRFIRLPEPHDYPSLYNASVAFGFDSHNDDFKVVRISCMLDDYSHGLTVPKVGIYSLASGFWRKNLASAPVCTLCFVGRDAPYGFVHGLVHWGAKRRVNNDDPHAWYHFVLSYSFEDEVFGEVLLPETLAHVSSYAVTVTVVGGNRNGKGLPLTVYRVSGGLPSYGDIWVMKEYGVVGSWTKVFSFDLRGFWLEAPSLGITVTGVTAPPSAMCVRNGGEVLLLMDVAGKGCLYSLDVERKTFTDLGIGGEGYTWYLYSGYYTETLVLLNDNAYGALLAIGSLTPCWYVMVTHMEKYANLNSENIVSQLQSEIXYSAELLQPMKSSSTNLARLLSSALDSTNISFSDIDTKVAPILFQAFETVPHLTQISYIGMEGLFFSYYSDHYQTLAMYSNSSSSSPSSGGASNKTLYYIQPVNRETGEVYGEAIISNPSINASWIQEAVNLSDGFASLGTKWSNGHDLLFXSSAKITRMGVISLGFSAKAITDFVTCINPQGTSSYLITRDGKVLVEGIQHIRLVVSNDTVSFQWVNASGTAIRNEGTVSCKDEAVASSLNIQDAEYLIHCHPIDIMGIQSVYVLAVPRNGFVSFDLNYKKKGLALFIVTTVMILVAAFSFLFINARATRREMHLCASLIKQKEATHQAERKNMNKSLAFASASHDVRTSLAGLTALIEISSELVDRGSELETRLTEMEECTQDLLGLLNSILDTSKIEVGKMQLKEEEFDISHILEDVVDLFHLVAMKKGXDLVLDPCNGSVIKYSRVKGDKGKLKQVLCNLLNNAVKFTNEGHIAVRAWAQKPTLHGAIIKTNQHSFMEHLSCLFYKKNKAHEDLEKAMNSIQQDPHSMDFVFEVDDTGKGIPKENYMSVFENYVQVKETAIGQEGTGLGLGIVQSLVRLMHGDIGIVDKDIGEKGTCFRFNVLLTLCESXTVMDGSTREDLEYGSGDRNQRQGRTIHATSSDSNVCFMSPRLHMCSSSSPRPEASHVVLLIGDKERRRTCQRFMERIGIKVKIVKCWEHLFDTLEKIKLKGRRHYSCGQSSPXSSNLSSESTSHNDNSFGRARRGVPLSAMDHGXEYIPSMFKKTSIGAAPGFILIVIDANAGPFSELRRIVSNFKKDLHNPNRCNVVWLDKPHIHSINSKTIDEXDIVISKPFHGSRLFQVIMLLPEYGGGAWQSSSKRESSHDDRAGKTFSSRDSSLSKYQSPRWMDRSEVSPSDESPCLSAEQKSSVRKSPVHIHHGEIQKCGDHSSCCKPLCGKKILVVEDNEMLRKTALATLIPLGASIEQCENGEQAVRLVHEGLTKDFPNPPYDYILMDCLMPVMDGCEATRRIRVMEKPYGVHIPIIALTADTDRTMTVTGMDFHIEKPLRREHLLEAIRYLHRKD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00125	120177	129235	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0007165 signal transduction

GO:0016310 phosphorylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0005515 protein binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000125s00010021.2	PF00646.28	F-box	2	42	6.80E-10
Glyur000125s00010021.2	PF00512.20	HisKA	778	839	4.00E-05
Glyur000125s00010021.2	PF02518.21	HATPase_c	891	1047	1.10E-25
Glyur000125s00010021.2	PF00072.19	Response_reg	1383	1500	9.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.228
SRR1783600	control	9.261
SRR1783602	moderate drought stress	17.737
SRR1811619	moderate drought stress	17.638

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.164
DRR006520	Root Summer glycyrrhizin high producing strain	9.302
DRR006521	Root Winter glycyrrhizin high producing strain	5.869
DRR006522	Root Winter glycyrrhizin high producing strain	5.806
DRR006523	Root Summer glycyrrhizin low producing strain	8.002
DRR006524	Root Summer glycyrrhizin low producing strain	8.411
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.429
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.475

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.757
SRR2868004	Drought Stress (root)	15.057
SRR2967015	Control (root)	15.458

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.654
SRR9715740	Leaf	8.095
SRR9715741	Leaf	9.304
SRR9715739	Root	5.834
SRR9715742	Root	7.466
SRR9715743	Root	7.367

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.681
SRR8749028	MeJA induced 9h	7.214
SRR8749029	MeJA induced 9h	4.327
SRR8749030	Uninduced	8.905
SRR8749031	Uninduced	8.257
SRR8749032	Uninduced	5.585

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.480
SRR8400027	Control - Root	20.854