Gene detail

Gene detail information of Glyur000125s00010017

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52180.1	9.00E-111	dual specificity protein phosphatase (DsPTP1) family protein
NR	XP_003556295.1	0	PREDICTED: phosphoglucan phosphatase DSP4, chloroplastic-like [Glycine max]
Swissprot	tr\|G4LTX4\|DSP4_CASSA	4.00E-164	Phosphoglucan phosphatase DSP4, amyloplastic {ECO:0000250\|UniProtKB:Q9FEB5} (Precursor)
trEMBL	tr\|I1NHQ7\|I1NHQ7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G33190.1}

Sequence

Transcript Sequence

>Glyur000125s00010017.1
CGCCATTAGAGTTCACCCATTTTCTTTGACTTTTTACACCCCTGGTCTCCAGTCTCCTGAGAGAGAAAGAGGGCATTGCCGTCCCAACTCCGATCCGATCCGAAGTGAAAGTGAATTTGAGAGAGACAAGTGAATCGTGATCCCTTCGAAGGGGAAAAAAATACATACAATATAATAACTTCGCAAATGTATGTATGAGAGACGCACAAAAAGGGTGTTGTCTTTTTCCATTTTGTCTTTTTCCTGGTTTTTTCCCCTTCTTCTGATGATTCGACACCAATAAAATATCTGAGCGAGAGAAGAGAATCGAAGAGAATGCGAAAGGCATCTTAAATCAAATCCCACATAACAACACAACACAAACTGAACTGAGCTCAAGCTTGCTCAACAAACACTGCTCAGTCAGAAAGAAACCAGAATTCTGNTCCAATCATGAACTGTCTTCAGAATCTGAATCTTCCTCGATCCTCTGTTTTGCCCTTCGAAACTNTTGTTACGCGCCACCATAAGAGCCTCCCTTTCTCTGCTCTATCGCTGGGAAACATCGGTAAATCTCATCACAATCGAAGCATGGCACTTAAGTCTGCTCCCGGTTCTATACCCAGTGCAGAGACAAGTAGCTCCGATGTGGAGGAGGTAAAGTCTGAGACATATATTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTGCAGACTCCTGAAGATGTTGACAAGCTACGTAGAATCGGAGTGAAAACTATATTTTGCTTGCAACAAGATCCAGACCTAGAGGACTTTGATGCATTTGATTTACGGAGACGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAGTAAATTCCAATGGAGGTGTGACATATGTGCATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCATATATGTTTTGGNTTCTGGGTTATAAACTTAATGAGGCTCATACACTACTTCAGAGCAAAAGGTCGTGCTTTCCAAAACTGGATGCCATAAAAAGTGCAACGGCTGATATTCTTACAGGCCTCATTAAGAAGCCTGTCACTTTGTCATGGGAAGATAGAAATTGCTCTACAGTGGAAATTGCGGGACTTGATATTGGATGGGGGCAGAGAATGCCCCTAGATTTTGATGACAAGCGGGGTTTATGGTCTCTCAAGAGGGAATTGCCTGAAGGACGCTACGAGTACAAGTACATTGTTGATGGGCAATGGACATGCAATAATGANGAGCTTGTAGCCTCTCCCAACAAAGATGGCCATGTCAACAATTTTCTTCAAGTCCTTGATGATACAAACAGTGTTCGCGCCTCCGTTTGGGAGAGAATGACCGGCGATGATCCCAATCTCACGAAGGATGAACGAATCAGAATCAAAGANTTTCTGGAAGCTTGTCCCTGATGATGATCTGTGAACCGGCAACGCACTTGCTTCATGTAAAGTAGTAGATGCACGTATATAATATATATGCTATCTAATAAAAGGTTGAATCTGAATCTTGATAAGATCTCTGTTACAAGCAGTTATATAATAATGTTGNGATGCAGCAGTTTATTGAGTTCCATAGCAATGAAATGTCTGTTGCGTTATTTAGATAGTACACTACACGCTTCCAATGTTAGAAATTTGAATTTTCTAAATATGCTCGACTCTAGCTAGTACTTTTCACTGTATTGTTTGAGTTGAAGCTAATATGCAATGTACGTTTAAATTTTATTCAAAAGCCTCTCCTCTCGCTGTCAACAAGAANAGGAACAGAAGAAAGAACCTACAAGAAGAAGATTACAAAATTAAGAAATAAATCAGTGTNAGGACGAACCTTGTTTCGTTTACTCCTATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00125	95512	102433	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005982 starch metabolic process

GO:0006470 protein dephosphorylation

GO:0007623 circadian rhythm

GO:0016311 dephosphorylation

molecular_function

GO:0008138 protein tyrosine/serine/threonine phosphatase activity

GO:0016791 phosphatase activity

GO:0019203 carbohydrate phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000125s00010017.1	PF00782.15	DSPc	125	196	3.60E-12
Glyur000125s00010017.2	PF00782.15	DSPc	171	242	4.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	83.099
SRR1783600	control	83.432
SRR1783602	moderate drought stress	74.726
SRR1811619	moderate drought stress	74.156

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	108.879
DRR006520	Root Summer glycyrrhizin high producing strain	107.274
DRR006521	Root Winter glycyrrhizin high producing strain	195.691
DRR006522	Root Winter glycyrrhizin high producing strain	189.112
DRR006523	Root Summer glycyrrhizin low producing strain	75.648
DRR006524	Root Summer glycyrrhizin low producing strain	76.363
DRR006525	Leaf Summer glycyrrhizin high producing strain	92.655
DRR006526	Leaf Summer glycyrrhizin high producing strain	92.538

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.731
SRR2868004	Drought Stress (root)	35.654
SRR2967015	Control (root)	44.472

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.465
SRR9715740	Leaf	43.949
SRR9715741	Leaf	31.288
SRR9715739	Root	18.000
SRR9715742	Root	27.226
SRR9715743	Root	26.590

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.259
SRR8749028	MeJA induced 9h	34.108
SRR8749029	MeJA induced 9h	27.956
SRR8749030	Uninduced	38.986
SRR8749031	Uninduced	34.814
SRR8749032	Uninduced	22.680

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.980
SRR8400027	Control - Root	77.626