Gene detail information of Glyur000125s00010015 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52190.1 | 2.00E-147 | phosphate transporter traffic facilitator1 |
| NR | XP_004496156.1 | 0 | PREDICTED: SEC12-like protein 1-like [Cicer arietinum] |
| COG | YP_001657540.1 | 1.00E-11 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|Q8GYE0|PHF1_ARATH | 0 | SEC12-like protein 1 |
| trEMBL | tr|I1NHQ6|I1NHQ6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G33180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00125 | 88975 | 93859 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000125s00010015.1 | PF00400.27 | WD40 | 115 | 143 | 0.0078 |
| Glyur000125s00010015.1 | PF00400.27 | WD40 | 157 | 187 | 5.10E-06 |
| Glyur000125s00010015.2 | PF00400.27 | WD40 | 25 | 54 | 0.0055 |
| Glyur000125s00010015.2 | PF00400.27 | WD40 | 68 | 98 | 3.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.350 |
| SRR1783600 | control | 19.030 |
| SRR1783602 | moderate drought stress | 10.944 |
| SRR1811619 | moderate drought stress | 15.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.685 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.652 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.780 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.338 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.837 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.124 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.742 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.445 |
| SRR2868004 | Drought Stress (root) | 38.937 |
| SRR2967015 | Control (root) | 49.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 69.304 |
| SRR9715740 | Leaf | 57.777 |
| SRR9715741 | Leaf | 64.475 |
| SRR9715739 | Root | 18.209 |
| SRR9715742 | Root | 28.031 |
| SRR9715743 | Root | 31.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.278 |
| SRR8749028 | MeJA induced 9h | 24.914 |
| SRR8749029 | MeJA induced 9h | 42.920 |
| SRR8749030 | Uninduced | 32.380 |
| SRR8749031 | Uninduced | 36.619 |
| SRR8749032 | Uninduced | 31.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.109 |
| SRR8400027 | Control - Root | 41.382 |