Gene detail information of Glyur000125s00010005 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24730.1 | 1.00E-67 | mRNA splicing factor, thioredoxin-like U5 snRNP |
| NR | XP_004496162.1 | 4.46E-93 | PREDICTED: thioredoxin-like protein 4B-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FE62|YLS8_ARATH | 7.00E-23 | Thioredoxin-like protein YLS8 |
| trEMBL | tr|A0A067K2B6|A0A067K2B6_JATCU | 2.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:KDP26410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00125 | 7942 | 21406 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000125s00010005.1 | PF02966.11 | DIM1 | 4 | 137 | 7.50E-47 |
| Glyur000125s00010005.1 | PF02966.11 | DIM1 | 148 | 187 | 1.60E-11 |
| Glyur000125s00010005.2 | PF02966.11 | DIM1 | 4 | 137 | 2.60E-47 |
| Glyur000125s00010005.3 | PF02966.11 | DIM1 | 4 | 137 | 2.60E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.258 |
| SRR1783600 | control | 2.682 |
| SRR1783602 | moderate drought stress | 1.409 |
| SRR1811619 | moderate drought stress | 1.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.826 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.871 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.083 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.509 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.272 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.672 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.068 |
| SRR2868004 | Drought Stress (root) | 0.133 |
| SRR2967015 | Control (root) | 0.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.955 |
| SRR9715740 | Leaf | 2.869 |
| SRR9715741 | Leaf | 3.140 |
| SRR9715739 | Root | 5.679 |
| SRR9715742 | Root | 4.590 |
| SRR9715743 | Root | 5.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.079 |
| SRR8749028 | MeJA induced 9h | 0.190 |
| SRR8749029 | MeJA induced 9h | 0.069 |
| SRR8749030 | Uninduced | 0.059 |
| SRR8749031 | Uninduced | 0.184 |
| SRR8749032 | Uninduced | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.382 |
| SRR8400027 | Control - Root | 11.086 |