Gene detail

Gene detail information of Glyur000124s00011966

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G13290.2	5.00E-145	beta-1,4-N-acetylglucosaminyltransferase family protein
NR	XP_003542632.1	0	PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [Glycine max]
COG	YP_004985011.1	3.00E-15	glycosyl transferase group 1 (modular protein), partial [Azospirillum brasilense Sp245]
trEMBL	tr\|I1LZQ1\|I1LZQ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G22730.1}

Sequence

Transcript Sequence

>Glyur000124s00011966.1
ATGACTCCCCGACCACGCCTCACTTCTAGACAAAAACTTCCTAGGTTCCTTTGTATCTTGCTTCTATTAGTGGTGCCAATTTGCGTTATTGGAATTTTCATCCATGGCCAAAAGATTTCCTATTTCTTCCGACCCCTTTGGGACAACCCCCCTGTCCCCTTCACACCTATACCTCACTATTATGCAGAAAATGTCTCTGTGGGCCACCTTTGCCATCTTCATGGTTGGTCCCTTCGCTCCCAGCCTCGCCGCATTTTCGATGCAATTATCTTCAGCAATGAGTATGACATGCTAGAGATTAGATGGCATGAACTGTACCCCTATGTGTCAAAATTTGTGATCCTCGAGTCCAACACCACATTCACAGGCATTCCAAAGCCTCTCTTCTTTGCCTTAAACCGGGAAAGATTCGCCTTTGCCAGACAAAAGATCGTCCACGGCTCTAGTCCCGGCAGAGTTGCGGTCCCGGGATCACACGAGGACCCGTTTGTGCTCGAGGCCAAACAACGCGTGGCCATGAATTCAATGATACGCCGTGCAGGGATTTCCAATGGCGATATCCTTCTCATGTCAGATACAGATGAGATTCCAAGCCCTCATACTCTGAAACTGCTTCAGTGGTGTGATGGGATCCCTCCCATAATGCACCTTGAACTGAGGCACTACATGTACTCGTTTGAGTTCCCCGTGGACTACAGCAGCTGGCGAGCCACTGCCCACGTCTACGGTCCCCGGACAAACTACCGGCATTCGCGCCAGACCGATGTGATCTTCTCNGACGCAGGGTGGCATTGCAGCTTTTGCTTTCGGTATATTTCGGAGTTTGTGTTCAAGATGACTGCCTATAGCCATGCGGACCGAGTGAAGTGGAAGTCTTTTCTCAGCCATTCAAGAATTCAGAACCTCATTTGCAAGGGAGGTGATCTTTTTGACATGCTCCCTGAAGAATACTCCTTCCAAGAGTTGATTAAAAAGATGGGGTCAATACCACGTTCGGCTTCTGCGGTCCATCTTCCTGCTTACTTGATAGAGAATGCAGATAAATTTAAGTTCCTTCTTCCTGGAGGTTGCTTAAGAACACCACAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00124	259043	260131	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT17

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00737	MGAT3	EC:2.4.1.144	N-Glycan biosynthesis	map00510

Gene Ontology

biological_process
GO:0006487 protein N-linked glycosylation

cellular_component
GO:0016020 membrane

molecular_function
GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000124s00011966.1	PF04724.8	Glyco_transf_17	8	360	1.20E-157

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.293
SRR1783600	control	10.647
SRR1783602	moderate drought stress	8.565
SRR1811619	moderate drought stress	8.672

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.099
DRR006520	Root Summer glycyrrhizin high producing strain	8.015
DRR006521	Root Winter glycyrrhizin high producing strain	5.472
DRR006522	Root Winter glycyrrhizin high producing strain	5.925
DRR006523	Root Summer glycyrrhizin low producing strain	8.858
DRR006524	Root Summer glycyrrhizin low producing strain	9.289
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.444
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.926

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.052
SRR2868004	Drought Stress (root)	8.706
SRR2967015	Control (root)	8.439

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.314
SRR9715740	Leaf	22.945
SRR9715741	Leaf	19.161
SRR9715739	Root	9.030
SRR9715742	Root	10.304
SRR9715743	Root	8.491

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.605
SRR8749028	MeJA induced 9h	1.908
SRR8749029	MeJA induced 9h	1.371
SRR8749030	Uninduced	1.500
SRR8749031	Uninduced	0.118
SRR8749032	Uninduced	0.339

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.066
SRR8400027	Control - Root	14.840