Gene detail information of Glyur000124s00011962 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59440.1 | 3.00E-32 | Calcium-binding EF-hand family protein |
| NR | XP_003549743.1 | 1.88E-98 | PREDICTED: calmodulin-like protein 5-like [Glycine max] |
| COG | YP_007118813.1 | 5.00E-16 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9LX27|CML4_ARATH | 7.00E-43 | Calmodulin-like protein 4 |
| trEMBL | tr|I1MU60|I1MU60_SOYBN | 7.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G12040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00124 | 199563 | 200246 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000124s00011962.1 | PF13499.1 | EF-hand_7 | 71 | 128 | 2.30E-15 |
| Glyur000124s00011962.1 | PF13499.1 | EF-hand_7 | 155 | 217 | 9.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.829 |
| SRR1783600 | control | 19.297 |
| SRR1783602 | moderate drought stress | 16.794 |
| SRR1811619 | moderate drought stress | 15.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 72.321 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.416 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.325 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.475 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 119.924 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 117.974 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 95.225 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 90.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.050 |
| SRR2868004 | Drought Stress (root) | 22.943 |
| SRR2967015 | Control (root) | 26.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 117.710 |
| SRR9715740 | Leaf | 135.595 |
| SRR9715741 | Leaf | 151.368 |
| SRR9715739 | Root | 16.461 |
| SRR9715742 | Root | 54.338 |
| SRR9715743 | Root | 57.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.673 |
| SRR8749028 | MeJA induced 9h | 4.582 |
| SRR8749029 | MeJA induced 9h | 2.069 |
| SRR8749030 | Uninduced | 2.901 |
| SRR8749031 | Uninduced | 0.862 |
| SRR8749032 | Uninduced | 0.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.509 |
| SRR8400027 | Control - Root | 38.614 |