Gene detail

Gene detail information of Glyur000124s00011950

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_004508460.1	0	PREDICTED: uncharacterized protein LOC101497459 [Cicer arietinum]
trEMBL	tr\|G7JFC5\|G7JFC5_MEDTR	0	Rap1-interacting factor 1 amino-terminal protein {ECO:0000313\|EMBL:AES91601.1}

Sequence

Transcript Sequence

>Glyur000124s00011950.1
CTTTCAGCATCAATCAGGTAGAGCCGTAGAGCGAGGGTTTGATCATTGACAAATCTCTGCAACGAAAACAATGTCAGAAGAGATTCGCGAAATCCATAGTCTGATTTCNTCGGATGACAACTCCAACAAGTGTTCGGGCTACTGCACCCTCTTGCAATTCCAACAACACTCTTGCCTCAACCCCTCTTCGCTTCAATCCCTCGCACAATCCTCCAATTCCCTAATCTCTTCTATCCTTTCCGATATCTCAGACGACGATGAAGAAATAGCTGCACAAGCGTTGAAGTGTTTGGGATTCATGATTTACCATCCCTCCGTTGTTTCCACGCTTCGAGTGGATGATGCCAATTTGGTCTTGGACTCATTGGCCAAACTTATTACGACCACAAAATTGAAGTCTGCTTGTAATTTAGGGGTATGGTGCTTATCTGTCCAACAGTTAGCTGCTTCATTTCTTGTTACNCACTTCCATTCTTTGTTACGGGCAATTGTTCATGCCCTAGACAATCCAATGGGTTCTTTGTCAACGACATTTGAAGCTACCCAGGCTATAATGAAGCTATCTGGGCAATTAAGTGAGCAAATGAGAGACTCATCCCATATATGGGCTCCTCCAATATACAGGAGACTTCTCAGCACAGACAAGAGGGAGAAAGATTCCTCAGAAAGGTGCCTGTTGAAGATCAGCTCTATAGTCATTCCTCCTTCATTGGATCTCTCCAAGGTTCTTGTCAAAGATATGAAGATAAAATTGCTCAGTGGGATGAAGGATTTACTAGATAATGGTATGAAGATTCAAGCTATTCGAGCATGGGGATGGTTTATTCGAATGCTTGGGTCCCATGCTTTGAAGAATAGGCATTTAGTTAATGATATGCTGAAAATTCCTGAGCGTACATTTACAGATCCTGACCCTCAAGTTCAGATTGCCACACAGGTTGCCTGGGAAGGTCTTATCGATGCTCTTGTTCACCGTCCAATATTGGATGCAGAGAAAAATACACCAGCTGAGGATACTTCTCTCCAGAAACAGCAATTACTTGGAAGGAGCAATTGTGACGATCAAGCAAATGGGTTTTNCAAAAGCATAAAGCTTATAATGACTCCACTGATTGGCGTCATGTCTAGTAAATGTGATATATCAGTTCATTCATCTTGCGTGAACACATGGTGTTATTTGCTACATAAGCTTGATACCTCTGTGAATGAACCATCATTGATAAAAATGGTTTTAGAGCCTATTCTTAAAGCAATATTTCAGAATGGACCTGATAGCAAGACCATCTGGTTATGGAACGTGGGCCTTGATATGCTCTGTGATAGTATTTCACAGAAGTGTAGGGATGTCATCTGCATTGAAATTGGACATTCTTTATCTGGCAAATGCTCTTGGAAGCAACACCAAATTAAATGGCTACCATGGGATATCAGTCNATTGGACTTTTATCTGAATATCATTTTTGTTCTCATTCGTCAAGCATCGGGGACAACTGTCACTTGTGATCATAGAAGTCTTGTTTATGATGCCACCTTAAAGTTATTTATATATATTCTGAAAGGAATCAAACTGGACATGGAAAGTCCATCTACCAATTATGANGATATTATATGGTGCTTGAACTCACTACTAACATTCATGAAAAAAATATGTGANGATTTGAACTCAGATGGTGGTGAAAATTATGACGTGTGTTATGCTTCCATTCAGTTTATAGATGCTATCACAAAGGAATTAGGTCCTTCTATCCTGGGATCTCCTCTGTACAAGNTTTCTTTAGATCTAAAGTACATTAATGACATGCAATCAGTTGACCATAACAAACACCTAAAATTCCTGAGTATCAGNTCTATTTCTTATATGGATAAGGTTTCTCCATTGGTTTATTTGATAGCGCTTTACTTCCATATGATGGTTCAGTTAACACTAAAGTCCCATCAATCAGACTGCATTTCACAAAGGCTGTGTGAGTATTTTAAATTTATATTTTCTTCGAGTGACCCCNTGGAAAATCTCCTCATCTGTATTGGCTTCTTGTTCAGACATGTTAAACCAACTTACTTAAATATATGGATAACAGTGGCTCAAGGTCTGAGTTACTGTGTATATGATGCAAACTGCAAGTCACTAAGGGAAGCCTTGTCTGATAACATGGGATATTCTTCCATATGCCATCTTTTAATATACCCCATTGTGGTACATTCTGTAGTTCNACGATTGACCCTGTCAAGTGCCAGTGCCTCTTTGGAGCAGTGCCCTGTATCACCAGACAGAAAGCCGAGGCTTGAGCTGGTTATTCAAACATGGAAATCACTTTATGGATCTNTTTGTGCTTCACGCTTTGGATGTTCAACAGCCACCAATTTCTCAGGGGATCTGTGTAAATTGATAAATAGGTGTCTTGATGAAAATGCTGACATGTTTGAGAGTGGAAATGATTATAAGTTAACATGCAATGATATAGATCTTGGCGTCCTTCATCTATCTGGCAATTTCTTGGTATGCATTCTAGAACAGATTCAGACTTCAGAATTAGATTCTGAAACAGACAGAAGGAAATCTGAATGTGATTGCAAAACACTCTGCTGCATAAAGAACTGCCTAAAATTTGCTTCCAAGTATATGAATTTGTTAAGGATAAAGATGGTGACAGACCCACTGGCTGGTTTTGTTGGGATCTCAAGGCTATCTTCTGCATTGGCATGCTTTANTAGTTGTCTTCACTGGAAGCAGGATATTCTTCTTTTTCTGGAGATTGTTTCCTGTCCACTACTTCAATGGCTGTCAAATATGGGAACGCAGGATGAAAGAACAAACGATCAACTCCAACTTCTGTGGACTGAAATTCTTAGTTCCTTAAGAAGAAGTCAACCCCCAATAAACTTTGGTTCAGCTTTACTCACACTTCACGAACCTCTATTTGAAAAAACTCTTGATCACCCATATCCCTCCATTTCAGAGCCAACCATCAATTTTTGGAATTCTACATTTGGTCNACAAATTATTTTAGATTTCCCCCCACATCTGCTTCATGTATTGGACAAGCTATCCAGACATGGAAAATTAAAACTTCAGAAGAGAAGCCTACCATCTCTTAAAAAATGTCATACTCATGAAGAAGTCGATGATGATGCTTTGCAGGGCTACAGGGTCACTGCAAAACATAACAGGACTTCTAAGAGGGTGGAACTAGTGTTGGATGCACAAACAGAGGCGCCTCCTTTAAGGTTTAAAAAGAAGAGGTTGGAATTCACTGAGCATCAAAAGGAAGTGAGGCGAGCACAGCAAGGAAGGGAAAGGGATAATGGAGGACATGGCCCAGGAATCAGAACTTACACCAATGCTGACTTTTCACNAGGGCACGATGAATCGCAAGAAAGCCAGGGGGACATAAGAGATTGTGAGGCCATATTGCAGATGTTGAGAAAAACTATCTAACTGGCTTTGAGTGTTGCACTGTGCATTGACGCAGCTCATGAAGAGGACTAAAATTCTGAATGGGTAAATTATTAATATTAATATTAATATTAATGGGAGCATTCTAAGTTAATCCATATTACTAGGATCCGTGTTAGGTCTTAGAGGAACGGTGTCCATTTTGATATTTTAAGAAGAGAAAAACCGTATAGGAACTTGAATTCCTTGGTTAGTTTTTTTTTTTGGTCAAAGTTGGTTAGTTTTCAAATTGGAAGGAGCTTT

Protein Sequence

>Glyur000124s00011950.1
MSEEIREIHSLISSDDNSNKCSGYCTLLQFQQHSCLNPSSLQSLAQSSNSLISSILSDISDDDEEIAAQALKCLGFMIYHPSVVSTLRVDDANLVLDSLAKLITTTKLKSACNLGVWCLSVQQLAASFLVTHFHSLLRAIVHALDNPMGSLSTTFEATQAIMKLSGQLSEQMRDSSHIWAPPIYRRLLSTDKREKDSSERCLLKISSIVIPPSLDLSKVLVKDMKIKLLSGMKDLLDNGMKIQAIRAWGWFIRMLGSHALKNRHLVNDMLKIPERTFTDPDPQVQIATQVAWEGLIDALVHRPILDAEKNTPAEDTSLQKQQLLGRSNCDDQANGFXKSIKLIMTPLIGVMSSKCDISVHSSCVNTWCYLLHKLDTSVNEPSLIKMVLEPILKAIFQNGPDSKTIWLWNVGLDMLCDSISQKCRDVICIEIGHSLSGKCSWKQHQIKWLPWDISXLDFYLNIIFVLIRQASGTTVTCDHRSLVYDATLKLFIYILKGIKLDMESPSTNYXDIIWCLNSLLTFMKKICXDLNSDGGENYDVCYASIQFIDAITKELGPSILGSPLYKXSLDLKYINDMQSVDHNKHLKFLSIXSISYMDKVSPLVYLIALYFHMMVQLTLKSHQSDCISQRLCEYFKFIFSSSDPXENLLICIGFLFRHVKPTYLNIWITVAQGLSYCVYDANCKSLREALSDNMGYSSICHLLIYPIVVHSVVXRLTLSSASASLEQCPVSPDRKPRLELVIQTWKSLYGSXCASRFGCSTATNFSGDLCKLINRCLDENADMFESGNDYKLTCNDIDLGVLHLSGNFLVCILEQIQTSELDSETDRRKSECDCKTLCCIKNCLKFASKYMNLLRIKMVTDPLAGFVGISRLSSALACFXSCLHWKQDILLFLEIVSCPLLQWLSNMGTQDERTNDQLQLLWTEILSSLRRSQPPINFGSALLTLHEPLFEKTLDHPYPSISEPTINFWNSTFGXQIILDFPPHLLHVLDKLSRHGKLKLQKRSLPSLKKCHTHEEVDDDALQGYRVTAKHNRTSKRVELVLDAQTEAPPLRFKKKRLEFTEHQKEVRRAQQGRERDNGGHGPGIRTYTNADFSXGHDESQESQGDIRDCEAILQMLRKTI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00124	131370	137598	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000124s00011950.1	PF12231.3	Rif1_N	13	299	3.30E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.383
SRR1783600	control	5.519
SRR1783602	moderate drought stress	7.339
SRR1811619	moderate drought stress	7.283

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.034
DRR006520	Root Summer glycyrrhizin high producing strain	4.066
DRR006521	Root Winter glycyrrhizin high producing strain	5.691
DRR006522	Root Winter glycyrrhizin high producing strain	5.335
DRR006523	Root Summer glycyrrhizin low producing strain	1.941
DRR006524	Root Summer glycyrrhizin low producing strain	1.909
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.764
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.750

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.810
SRR2868004	Drought Stress (root)	1.215
SRR2967015	Control (root)	1.523

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.981
SRR9715740	Leaf	0.950
SRR9715741	Leaf	0.665
SRR9715739	Root	0.555
SRR9715742	Root	2.537
SRR9715743	Root	2.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.213
SRR8749028	MeJA induced 9h	9.327
SRR8749029	MeJA induced 9h	5.552
SRR8749030	Uninduced	2.896
SRR8749031	Uninduced	2.638
SRR8749032	Uninduced	2.159

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.521
SRR8400027	Control - Root	6.299